RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ANLNQ9NQW6 1124 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 HELLSQ9NRZ9 838 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNH7Q9NS40 1196 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCND1Q9NSA2 647 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBC1D22BQ9NU19 505 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARGLU1Q9NWB6 273 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATA6Q9NWH7 488 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MKS1Q9NXB0 559 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CWC25Q9NXE8 425 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NKIRAS2Q9NYR9 191 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TFCP2L1Q9NZI6 479 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCMF1Q9P0J7 381 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 POGKQ9P215 609 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP36Q9P275 1121 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDP2Q9P2J9 529 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC17A6Q9P2U8 582 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NCDNQ9UBB6 729 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPARGC1AQ9UBK2 798 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 EBF1Q9UH73 591 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FEZ2Q9UHY8 353 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC13A4Q9UKG4 626 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TLK1Q9UKI8 766 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACAD8Q9UKU7 415 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 HDAC9Q9UKV0 1011 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DENND2AQ9ULE3 1009 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ODF2LQ9ULJ1 636 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TPCN1Q9ULQ1 816 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PADI4Q9UM07 663 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM50BQ9Y247 325 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATP11BQ9Y2G3 1177 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBC1D30Q9Y2I9 924 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPN22Q9Y2R2 807 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 AFG3L2Q9Y4W6 797 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CTDP1Q9Y5B0 961 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DMRT1Q9Y5R6 373 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRRFIP2Q9Y608 721 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DUSP10Q9Y6W6 482 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC196A0A1B0GTZ2 297 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBA6A0AVT1 1052 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANKRD18BA2A2Z9 1011 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GTPBP10A4D1E9 387 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 EME2A4GXA9 379 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 A6NCN8 305 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PABPN1LA6NDY0 278 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTC36A6NLP5 189 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GOLGA8AA7E2F4 631 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRSS47A8MTI9 375 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RASA4BC9J798 803 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM227AF5H4B4 570 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 H3BML4 177 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 hCG_1984214I3L0E3 225 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 M0R2C6 588 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FZD9O00144 591 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CBX4O00257 560 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GOLIM4O00461 696 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TPP1O14773 563 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC27A2O14975 620 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 NCAM2O15394 837 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXP2O15409 715 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FFAR2O15552 330 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTSS1O43312 755 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RASA4O43374 803 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FRS3O43559 492 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 AP1G1O43747 822 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PEX1O43933 1283 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA12O60330 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DLX3O60479 287 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PQBP1O60828 265 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMCC2O75069 709 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERN1O75460 977 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TUSC2O75896 110 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SOAT2O75908 522 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNF8O76064 485 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTA2O94776 668 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BAIAP3O94812 1187 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLHL18O94889 574 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCAF4O95104 1147 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MBD4O95243 580 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRTAMO95727 393 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ONECUT2O95948 504 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRG1P02750 347 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLPIP03973 132 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PYGLP06737 847 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 THP07101 528 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 POU2F2P09086 479 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SNRPA1P09661 255 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PARP1P09874 1014 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFIT1P09914 478 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 C6orf222P0C671 652 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM191BP0C7N4 346 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DHRS4L1P0CG22 281 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNF224P0DH78 156 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 T-ENOLP0DO92 83 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 VSIG10L2P0DP72 767 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SNHG28P0DPA3 235 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYCLP12524 364 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTHFD2P13995 350 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNA6P17658 529 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPN1P18031 435 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITGB6P18564 788 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms