RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 MYADMQ96S97 322 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 IRF2BPLQ9H1B7 796 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 ZSCAN16Q9H4T2 348 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 RPF1Q9H9Y2 349 aaKnown RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 STK17AQ9UEE5 414 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 ZFP37Q9Y6Q3 630 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 C5orf42Q9H799 3197 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 CCL16O15467 120 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 PDGFBP01127 241 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-215ENST00000515516 CXCL8P10145 99 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 IGFBP6P24592 240 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-215ENST00000515516 HOXD11P31277 338 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-215ENST00000515516 NUBP1P53384 320 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 VCPP55072 806 aaKnown RBP14.89□□□□□ -0.03
TCOF1-215ENST00000515516 ARPP19P56211 112 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 PTPAQ15257 358 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 VARS2Q5ST30 1063 aaKnown RBP14.89□□□□□ -0.03
TCOF1-215ENST00000515516 CD300LGQ6UXG3 332 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 SV2BQ7L1I2 683 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 KCNN1Q92952 543 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 TSPAN18Q96SJ8 248 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 MSTO1Q9BUK6 570 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 DUSP12Q9UNI6 340 aa14.89□□□□□ -0.03
TCOF1-215ENST00000515516 PRRG1O14668 218 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 OGTO15294 1046 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 STX6O43752 255 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 N4BP1O75113 896 aaKnown RBP14.88□□□□□ -0.03
TCOF1-215ENST00000515516 PIGRP01833 764 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 LAMP2P13473 410 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 RFX1P22670 979 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 FAM173BQ6P4H8 233 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 CCDC73Q6ZRK6 1079 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 ALYREFQ86V81 257 aaKnown RBP14.88□□□□□ -0.03
TCOF1-215ENST00000515516 CD302Q8IX05 232 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 FLCNQ8NFG4 579 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 ZNF461Q8TAF7 563 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 LRRC15Q8TF66 581 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 RSAD2Q8WXG1 361 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 FAM212AQ96EL1 285 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 SUSD3Q96L08 255 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 CLIC6Q96NY7 704 aa14.88□□□□□ -0.03
TCOF1-215ENST00000515516 FBXO2Q9UK22 296 aaPredicted RBP14.88□□□□□ -0.03
TCOF1-215ENST00000515516 UBQLN1Q9UMX0 589 aaKnown RBP14.88□□□□□ -0.03
TCOF1-215ENST00000515516 TDRD15B5MCY1 1934 aaKnown RBP14.88□□□□□ -0.03
TCOF1-215ENST00000515516 TTC26A0AVF1 554 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 LACTBL1A8MY62 500 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 STK25O00506 426 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 LRG1P02750 347 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 POU2F2P09086 479 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 CYP3A5P20815 502 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 NMT1P30419 496 aaKnown RBP14.87□□□□□ -0.03
TCOF1-215ENST00000515516 GTF2BQ00403 316 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 SPAG1Q07617 926 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 CTXN3Q4LDR2 81 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 ASTLQ6HA08 431 aaPredicted RBP14.87□□□□□ -0.03
TCOF1-215ENST00000515516 SLFN12LQ6IEE8 588 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 SLC8B1Q6J4K2 584 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 ZNF280DQ6N043 979 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 RSPO2Q6UXX9 243 aaPredicted RBP14.87□□□□□ -0.03
TCOF1-215ENST00000515516 USP49Q70CQ1 688 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 DYMQ7RTS9 669 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 SLC44A3Q8N4M1 653 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 PRSS33Q8NF86 280 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 HAPLN2Q9GZV7 340 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 CYP4F11Q9HBI6 524 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 TUBGCP4Q9UGJ1 667 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 CDH7Q9ULB5 785 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 PCDHB8Q9UN66 801 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 MTMR6Q9Y217 621 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 TECTAO75443 2155 aa14.87□□□□□ -0.03
TCOF1-215ENST00000515516 A0A0B4J269 797 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 MEFVO15553 781 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 HSP90AA1P07900 732 aaKnown RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 CFHP08603 1231 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 TNFSF9P41273 254 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 STAT6P42226 847 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 CLCN5P51795 746 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 NTHL1P78549 312 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 ROR1Q01973 937 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 SLC39A14Q15043 492 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 STK38Q15208 465 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 PABPC1LQ4VXU2 614 aaKnown RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 ADALQ6DHV7 355 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 DSTYKQ6XUX3 929 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 MTSS1LQ765P7 747 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 USP37Q86T82 979 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 MAP4K3Q8IVH8 894 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 SIX5Q8N196 739 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 ELMOD1Q8N336 334 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 BEST2Q8NFU1 509 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 DDX12PQ92771 950 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 ZNF396Q96N95 335 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 OXCT2Q9BYC2 517 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 MRPL44Q9H9J2 332 aaKnown RBP14.86□□□□□ -0.03
TCOF1-215ENST00000515516 SEL1LQ9UBV2 794 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 WNT16Q9UBV4 365 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 KCNH3Q9ULD8 1083 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 EXOC7Q9UPT5 735 aa14.86□□□□□ -0.03
TCOF1-215ENST00000515516 TULP1O00294 542 aaPredicted RBP14.85□□□□□ -0.03
TCOF1-215ENST00000515516 NARSO43776 548 aaKnown RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms