RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZDHHC24Q6UX98 284 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 PHF13Q86YI8 300 aaPredicted RBP15.86■□□□□ 0.13
NUP54-217ENST00000514987 ABRAQ8N0Z2 381 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.86■□□□□ 0.13
NUP54-217ENST00000514987 GRK7Q8WTQ7 553 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 SGIP1Q9BQI5 828 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 TARS2Q9BW92 718 aaKnown RBP15.86■□□□□ 0.13
NUP54-217ENST00000514987 MRPL4Q9BYD3 311 aaKnown RBP15.86■□□□□ 0.13
NUP54-217ENST00000514987 SPATC1LQ9H0A9 340 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 C2orf40Q9H1Z8 148 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 CENPHQ9H3R5 247 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 AZI2Q9H6S1 392 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 CNOT10Q9H9A5 744 aaKnown RBP15.86■□□□□ 0.13
NUP54-217ENST00000514987 GRHL1Q9NZI5 618 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 FZD1Q9UP38 647 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 SNX24Q9Y343 169 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 PCDHB4Q9Y5E5 795 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 PTPRFP10586 1907 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 NDUFAB1O14561 156 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 PROSCO94903 275 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 HIRAP54198 1017 aaPredicted RBP15.85■□□□□ 0.13
NUP54-217ENST00000514987 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
NUP54-217ENST00000514987 CALCOCO2Q13137 446 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 MXD4Q14582 209 aaPredicted RBP15.85■□□□□ 0.13
NUP54-217ENST00000514987 SIX1Q15475 284 aaPredicted RBP15.85■□□□□ 0.13
NUP54-217ENST00000514987 AADACL2Q6P093 401 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 MON1BQ7L1V2 547 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 WDR49Q8IV35 697 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 BRSK2Q8IWQ3 736 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 BBXQ8WY36 941 aaPredicted RBP15.85■□□□□ 0.13
NUP54-217ENST00000514987 ART4Q93070 314 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 BTBD6Q96KE9 485 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 TMEM109Q9BVC6 243 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 WHRNQ9P202 907 aa15.85■□□□□ 0.13
NUP54-217ENST00000514987 MROH7Q68CQ1 1323 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 ATXN2Q99700 1313 aaKnown RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 CNTNAP2Q9UHC6 1331 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 SOWAHBA6NEL2 793 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 MYO1CO00159 1063 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 CLDN3O15551 220 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 PSTPIP1O43586 416 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 SORBS3O60504 671 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 TOM1L1O75674 476 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 GNA15P30679 374 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 CETN2P41208 172 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 RPL21P46778 160 aaKnown RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 IREB2P48200 963 aaKnown RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 CCT5P48643 541 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 PPP2R2AP63151 447 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 IRX3P78415 501 aaPredicted RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 CAV1Q03135 178 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 BYSLQ13895 437 aaKnown RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 CAPSQ13938 189 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 PTGISQ16647 500 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 ODF2Q5BJF6 829 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 TREML2Q5T2D2 321 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 TTC27Q6P3X3 843 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 MICALCLQ6ZW33 695 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 ZBTB8OSQ8IWT0 167 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 OR2W6PQ8NHA6 318 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 FBXO25Q8TCJ0 367 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 ZNF526Q8TF50 670 aaPredicted RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 PCYT2Q99447 389 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 PAGR1Q9BTK6 254 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 HAPLN2Q9GZV7 340 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 STMN4Q9H169 189 aaPredicted RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 BTBD7Q9P203 1132 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 ANKFY1Q9P2R3 1169 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 CHORDC1Q9UHD1 332 aaPredicted RBP15.84■□□□□ 0.13
NUP54-217ENST00000514987 GGA2Q9UJY4 613 aa15.84■□□□□ 0.13
NUP54-217ENST00000514987 LOC102724159A0A0B4J2E5 919 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 CXCL11O14625 94 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 IRF6O14896 467 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 RARGP13631 454 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 RRM1P23921 792 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 CORO7P57737 925 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 NOMO3P69849 1222 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 NOP14P78316 857 aaKnown RBP15.83■□□□□ 0.13
NUP54-217ENST00000514987 NCOA4Q13772 614 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 PWP2Q15269 919 aaKnown RBP15.83■□□□□ 0.13
NUP54-217ENST00000514987 PPP1R7Q15435 360 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 SGO2Q562F6 1265 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 NCAPG2Q86XI2 1143 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 RHOT1Q8IXI2 618 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 ZDHHC14Q8IZN3 488 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 RBBP8NLQ8NC74 664 aaPredicted RBP15.83■□□□□ 0.13
NUP54-217ENST00000514987 CPA5Q8WXQ8 436 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 PGM2Q96G03 612 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 ZBTB45Q96K62 511 aaPredicted RBP15.83■□□□□ 0.13
NUP54-217ENST00000514987 ADAM22Q9P0K1 906 aa15.83■□□□□ 0.13
NUP54-217ENST00000514987 PAPPA2Q9BXP8 1791 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 LGR5O75473 907 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 LSM8O95777 96 aaKnown RBP15.83■□□□□ 0.12
NUP54-217ENST00000514987 GAS8O95995 478 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 ITIH2P19823 946 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 TCF7P36402 384 aaPredicted RBP15.83■□□□□ 0.12
NUP54-217ENST00000514987 SLC26A2P50443 739 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 GUCY1A3Q02108 690 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 ADCY2Q08462 1091 aa15.83■□□□□ 0.12
NUP54-217ENST00000514987 C6orf118Q5T5N4 469 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms