RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PLVAPQ9BX97 442 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 KCND2Q9NZV8 630 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 STOML1Q9UBI4 398 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 TXNDC9O14530 226 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 DDX3YO15523 660 aaKnown RBP10.25□□□□□ -0.77
VCAN-210ENST00000513960 AHCYL1O43865 530 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 ARP10275 920 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 FMO5P49326 533 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 ITGA8P53708 1063 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 PPP1R15BQ5SWA1 713 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 KAZNQ674X7 775 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 MIER3Q7Z3K6 550 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 RANBP17Q9H2T7 1088 aaKnown RBP10.25□□□□□ -0.77
VCAN-210ENST00000513960 UNC45AQ9H3U1 944 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 ACP6Q9NPH0 428 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 PHTF1Q9UMS5 762 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 GOLGA8RI6L899 631 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 OPHN1O60890 802 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 IFNB1P01574 187 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 VIL1P09327 827 aaKnown RBP10.25□□□□□ -0.77
VCAN-210ENST00000513960 KRT5P13647 590 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 CETN2P41208 172 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 PEX5P50542 639 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 CUL3Q13618 768 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 MDH1BQ5I0G3 518 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 AGGF1Q8N302 714 aaeCLIP10.25□□□□□ -0.77
VCAN-210ENST00000513960 FAM13CQ8NE31 585 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 CFAP61Q8NHU2 1237 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 SMC6Q96SB8 1091 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 SYT15Q9BQS2 421 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 TBC1D10AQ9BXI6 508 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 ARHGEF3Q9NR81 526 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 FBXO28Q9NVF7 368 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 CYP39A1Q9NYL5 469 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 GRHL1Q9NZI5 618 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 FEM1BQ9UK73 627 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 CCPG1Q9ULG6 757 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 NRXN2Q9P2S2 1712 aa10.25□□□□□ -0.77
VCAN-210ENST00000513960 ATP9AO75110 1047 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 RAB27AP51159 221 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 COG2Q14746 738 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 TAF1BQ53T94 588 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 CKAP2Q8WWK9 683 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 KLF6Q99612 283 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 STK33Q9BYT3 514 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 INTS2Q9H0H0 1204 aaKnown RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 EPB41L4BQ9H329 900 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SAYSD1Q9NPB0 183 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SIX2Q9NPC8 291 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 AGPAT3Q9NRZ7 376 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 LARSQ9P2J5 1176 aaKnown RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 TCEAL9Q9UHQ7 104 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 UBE4BO95155 1302 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 FRMPD4Q14CM0 1322 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SCN9AQ15858 1988 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 K7ENM7 598 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 FOXN3O00409 490 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 GYG2O15488 501 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 PIAS1O75925 651 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 BCRP11274 1271 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 YY1P25490 414 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 RPS6KA3P51812 740 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 LRRC36Q1X8D7 754 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 NBPF20Q3BBV1 942 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SLC30A5Q8TAD4 765 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 NUP85Q9BW27 656 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SIPA1L1O43166 1804 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 COL11A2P13942 1736 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 GOLGA8SH3BPF8 625 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 GOLGA8MH3BSY2 632 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 O00370 1275 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 CAPN9O14815 690 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 PYGLP06737 847 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 HSPA6P17066 643 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 POLD1P28340 1107 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 JAM2P57087 298 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 CWF19L1Q69YN2 538 aaKnown RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 CCDC62Q6P9F0 684 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 RHOT2Q8IXI1 618 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 TTC1Q99614 292 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 ZSWIM1Q9BR11 485 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 COG5Q9UP83 839 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 NAALADL1Q9UQQ1 740 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 DIS3Q9Y2L1 958 aaKnown RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 CTDP1Q9Y5B0 961 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 DCTN3O75935 186 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 TROVE2P10155 538 aaKnown RBP eCLIP10.24□□□□□ -0.77
VCAN-210ENST00000513960 GCLMP48507 274 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 GPC5P78333 572 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SPARCL1Q14515 664 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 NFIL3Q16649 462 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 C2CD6Q53TS8 623 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 DPY19L2P1Q6NXN4 242 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 SLC13A5Q86YT5 568 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 CYP4X1Q8N118 509 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 ZNF564Q8TBZ8 553 aaPredicted RBP10.24□□□□□ -0.77
VCAN-210ENST00000513960 FBXO41Q8TF61 875 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 C7orf43Q8WVR3 580 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 RIT2Q99578 217 aa10.24□□□□□ -0.77
VCAN-210ENST00000513960 AGPAT1Q99943 283 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms