RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SWT1Q5T5J6 900 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 ZNF790Q6PG37 636 aa11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 BNC2Q6ZN30 1099 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 FNIP1Q8TF40 1166 aa11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 NMD3Q96D46 503 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 APOL6Q9BWW8 343 aa11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 TPRKBQ9Y3C4 175 aa11.77□□□□□ -0.53
LIMCH1-217ENST00000512946 hCG_1642624A0A1W2PR95 340 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 PHGDHO43175 533 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 IFNA14P01570 189 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 IL6P05231 212 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TFAMQ00059 246 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 COX10Q12887 443 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TOP3AQ13472 1001 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 GSTA3Q16772 222 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 OSCP1Q8WVF1 389 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 RNFT2Q96EX2 444 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 HEXIM2Q96MH2 286 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 L2HGDHQ9H9P8 463 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 PARVAQ9NVD7 372 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 LIN7AO14910 233 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 ATP9AO75110 1047 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 AP3B2Q13367 1082 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 LRRC41Q15345 812 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 ARHGEF19Q8IW93 802 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 FMR1NBQ8N0W7 255 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 KRT78Q8N1N4 520 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 NFATC2IPQ8NCF5 419 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 RXFP1Q9HBX9 757 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 EURLQ9NYK6 297 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 AMACRQ9UHK6 382 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 MYRFQ9Y2G1 1151 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 CARD8Q9Y2G2 431 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 CAND2O75155 1236 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TSC22D2O75157 780 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 VIL1P09327 827 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 SCP2P22307 547 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 ATN1P54259 1190 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 FBXW4P57775 412 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 MXD4Q14582 209 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 RBBP7Q16576 425 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 FAM47AQ5JRC9 791 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 EFHC1Q5JVL4 640 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 SLFN13Q68D06 897 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 CCDC81Q6ZN84 652 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 CCDC33Q8N5R6 958 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 MCPH1Q8NEM0 835 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 ZIM3Q96PE6 472 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 RPF1Q9H9Y2 349 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 RTN2O75298 545 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 PRLRP16471 622 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 WARSP23381 471 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 USP39Q53GS9 565 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 DCAF15Q66K64 600 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 MAPKAPK5Q8IW41 473 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TGFBRAP1Q8WUH2 860 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 SUGCTQ9HAC7 445 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 HDAC6Q9UBN7 1215 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TAGLN3Q9UI15 199 aa11.76□□□□□ -0.53
LIMCH1-217ENST00000512946 TTC26A0AVF1 554 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 CLIC2O15247 247 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 RRM2P31350 389 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 TGFBR2P37173 567 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 SESN2P58004 480 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 TBCKQ8TEA7 893 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 NOL6Q9H6R4 1146 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 FBXO28Q9NVF7 368 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 SERPINB13Q9UIV8 391 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 AP3M1Q9Y2T2 418 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 KATNA1O75449 491 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ZNF18P17022 549 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 BCAP31P51572 246 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 NCKAP1LP55160 1127 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 KCNH2Q12809 1159 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 SLC18A3Q16572 532 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 PKN3Q6P5Z2 889 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ELMSAN1Q6PJG2 1045 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 FRMD5Q7Z6J6 570 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 KIF2BQ8N4N8 673 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 SH2D3CQ8N5H7 860 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 MDM1Q8TC05 714 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 PAK5Q9P286 719 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 NFKBIL1Q9UBC1 381 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 CRNNQ9UBG3 495 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 TMCO1Q9UM00 188 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ATP10DQ9P241 1426 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 VWA5AO00534 786 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 S100A6P06703 90 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 FNTAP49354 379 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 STILQ15468 1287 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 EFHC2Q5JST6 749 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 IZUMO2Q6UXV1 221 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ZBTB49Q6ZSB9 765 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 NEK10Q6ZWH5 1172 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 SH3BP5LQ7L8J4 393 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 YTHDF3Q7Z739 585 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ERP44Q9BS26 406 aa11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ILKAPQ9H0C8 392 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-217ENST00000512946 ADD3Q9UEY8 706 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms