RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 USP25Q9UHP3 1055 aa6.94□□□□□ -1.3
NUP54-209ENST00000510569 GPANK1O95872 356 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 ZNF169Q14929 603 aaPredicted RBP6.93□□□□□ -1.3
NUP54-209ENST00000510569 CYP2A13Q16696 494 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 FBXO42Q6P3S6 717 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 Q6ZNX1 250 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 UBE3BQ7Z3V4 1068 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 ZGPATQ8N5A5 531 aaKnown RBP6.93□□□□□ -1.3
NUP54-209ENST00000510569 MANSC1Q9H8J5 431 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 TBCCD1Q9NVR7 557 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 PRKAB1Q9Y478 270 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 SALL3Q9BXA9 1300 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 AATKQ6ZMQ8 1374 aa6.93□□□□□ -1.3
NUP54-209ENST00000510569 MYADML2A6NDP7 307 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 TRIM75PA6NK02 468 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 CKBP12277 381 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 CNGA1P29973 690 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 IL12RB1P42701 662 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 VAV2P52735 878 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 DACT2Q5SW24 774 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 NUP133Q8WUM0 1156 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 SSH1Q8WYL5 1049 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 TMX1Q9H3N1 280 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 WASHC2AQ641Q2 1341 aa6.92□□□□□ -1.3
NUP54-209ENST00000510569 WASP42768 502 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 KLF1Q13351 362 aaPredicted RBP6.91□□□□□ -1.3
NUP54-209ENST00000510569 FOXR2Q6PJQ5 311 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 CAGE1Q8TC20 777 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 CCHCR1Q8TD31 782 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 NELL1Q92832 810 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 UNKLQ9H9P5 680 aaKnown RBP6.91□□□□□ -1.3
NUP54-209ENST00000510569 TLK1Q9UKI8 766 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 RUVBL1Q9Y265 456 aaKnown RBP6.91□□□□□ -1.3
NUP54-209ENST00000510569 SPATA31A6Q5VVP1 1343 aa6.91□□□□□ -1.3
NUP54-209ENST00000510569 ZFPL1O95159 310 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 DDCP20711 480 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 PTH2RP49190 550 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 ELLP55199 621 aaPredicted RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 SIM1P81133 766 aaPredicted RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 SLFN5Q08AF3 891 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 ZNF362Q5T0B9 420 aaPredicted RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 FITM2Q8N6M3 262 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 BOLLQ8N9W6 283 aaKnown RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 MED15Q96RN5 788 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 LRFN3Q9BTN0 628 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 FAM126AQ9BYI3 521 aaPredicted RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 ADARB2Q9NS39 739 aaKnown RBP6.9□□□□□ -1.3
NUP54-209ENST00000510569 FOXJ2Q9P0K8 574 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 HSFX1Q9UBD0 423 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 DNM3Q9UQ16 869 aa6.9□□□□□ -1.3
NUP54-209ENST00000510569 PHLDB1Q86UU1 1377 aa6.9□□□□□ -1.31
NUP54-209ENST00000510569 ERN1O75460 977 aaKnown RBP6.89□□□□□ -1.31
NUP54-209ENST00000510569 CLSTN1O94985 981 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 RARRES1P49788 294 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 NOMO3P69849 1222 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 NOMO2Q5JPE7 1267 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 LNX2Q8N448 690 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 MARS2Q96GW9 593 aaKnown RBP6.89□□□□□ -1.31
NUP54-209ENST00000510569 PDLIM2Q96JY6 352 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 PNKPQ96T60 521 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 C7orf25Q9BPX7 421 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 DUSP26Q9BV47 211 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 CASS4Q9NQ75 786 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 MTO1Q9Y2Z2 717 aaKnown RBP6.89□□□□□ -1.31
NUP54-209ENST00000510569 MYBBP1AQ9BQG0 1328 aaKnown RBP6.89□□□□□ -1.31
NUP54-209ENST00000510569 KAT6AQ92794 2004 aa6.89□□□□□ -1.31
NUP54-209ENST00000510569 CDHR4A6H8M9 788 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 ZNF37AP17032 561 aaPredicted RBP6.88□□□□□ -1.31
NUP54-209ENST00000510569 CTXN1P60606 82 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 COLGALT2Q8IYK4 626 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 Q8NA96 180 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 SLC2A13Q96QE2 648 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 AIFM2Q9BRQ8 373 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 C11orf54Q9H0W9 315 aaPredicted RBP6.88□□□□□ -1.31
NUP54-209ENST00000510569 GSTO2Q9H4Y5 243 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 KCTD5Q9NXV2 234 aa6.88□□□□□ -1.31
NUP54-209ENST00000510569 TCRBV7S2A1N4TA0A589 114 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 MGST3O14880 152 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 MRPS35P82673 323 aaKnown RBP6.87□□□□□ -1.31
NUP54-209ENST00000510569 ATP2B3Q16720 1220 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 GEN1Q17RS7 908 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 INAVAQ3KP66 663 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 AMOTL1Q8IY63 956 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 DCBLD1Q8N8Z6 715 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.87□□□□□ -1.31
NUP54-209ENST00000510569 NLGN4YQ8NFZ3 816 aaPredicted RBP6.87□□□□□ -1.31
NUP54-209ENST00000510569 ATL2Q8NHH9 583 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 NRG4Q8WWG1 115 aa6.87□□□□□ -1.31
NUP54-209ENST00000510569 PTCD3Q96EY7 689 aaKnown RBP6.87□□□□□ -1.31
NUP54-209ENST00000510569 HAUS5O94927 633 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 C1RP00736 705 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 FCER1AP12319 257 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 SLC6A4P31645 630 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 NHLH1Q02575 133 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 SP5Q6BEB4 398 aaPredicted RBP6.86□□□□□ -1.31
NUP54-209ENST00000510569 ACTRT2Q8TDY3 377 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 SSH3Q8TE77 659 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 DPF2Q92785 391 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 RSAD1Q9HA92 442 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 SEMA4GQ9NTN9 838 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms