RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	STOML1	Q9UBI4	398 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	NEXMIF	Q5QGS0	1516 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	CCDC195	A0A1B0GUA6	201 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	ZNF197	O14709	1029 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	NOTUM	Q6P988	496 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	CCDC137	Q6PK04	289 aa	Known RBP	13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	PPHLN1	Q8NEY8	458 aa	Known RBP	13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	LZIC	Q8WZA0	190 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	FGFR1OP2	Q9NVK5	253 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	CFAP69	A5D8W1	941 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	THOC1	Q96FV9	657 aa	Known RBP	13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	TAAR1	Q96RJ0	339 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	MUC3B	Q9H195	1237 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	ADARB2	Q9NS39	739 aa	Known RBP	13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	KCNH7	Q9NS40	1196 aa		13.85	□□□□□ -0.19
PTPRF-215	ENST00000496447	EEF1B2	P24534	225 aa	Known RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	TCF7	P36402	384 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	KRT17	Q04695	432 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	CRYM	Q14894	314 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	ATPAF2	Q8N5M1	289 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	ATP11C	Q8NB49	1132 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	C7orf25	Q9BPX7	421 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	CAMSAP1	Q5T5Y3	1602 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	MYB	P10242	640 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	PSMD7	P51665	324 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	CPA5	Q8WXQ8	436 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	PRPF4	O43172	522 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	NPTXR	O95502	500 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	MME	P08473	750 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	KIT	P10721	976 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	TBCC	Q15814	346 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	PPP4R4	Q6NUP7	873 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	NLRP14	Q86W24	1093 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	SETBP1	Q9Y6X0	1596 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	TRPA1	O75762	1119 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	FMO5	P49326	533 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	RPS6	P62753	249 aa	Known RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	FASTKD1	Q53R41	847 aa	Known RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	IZUMO3	Q5VZ72	239 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	IL31	Q6EBC2	164 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	KRT80	Q6KB66	452 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	COL23A1	Q86Y22	540 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	VIPAS39	Q9H9C1	493 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	CASS4	Q9NQ75	786 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	KLHL11	Q9NVR0	708 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	TADA3	O75528	432 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	DCTN3	O75935	186 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	ACTR2	P61160	394 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	SYTL3	Q4VX76	610 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	TEX9	Q8N6V9	391 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	NT5C1A	Q9BXI3	368 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	STK33	Q9BYT3	514 aa		13.84	□□□□□ -0.19
PTPRF-215	ENST00000496447	GMNC	A6NCL1	334 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	KCNN4	O15554	427 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	ARSE	P51690	589 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	MDM2	Q00987	491 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	SLC30A5	Q8TAD4	765 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	GPRASP2	Q96D09	838 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	FAM49B	Q9NUQ9	324 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	AIPL1	Q9NZN9	384 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	INTU	Q9ULD6	942 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	TRIM33	Q9UPN9	1127 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	MADD	Q8WXG6	1647 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	IGSF9B	Q9UPX0	1349 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	FAM187A	A6NFU0	413 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	C3orf70	A6NLC5	250 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	ALDH1A3	P47895	512 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	MORF4L2	Q15014	288 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	CXorf38	Q8TB03	319 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	COG4	Q9H9E3	785 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	AAAS	Q9NRG9	546 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	TYK2	P29597	1187 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	EPHX2	P34913	555 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	THPO	P40225	353 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	FBXW10	Q5XX13	1052 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	PLEKHH3	Q7Z736	793 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	OSBPL1A	Q9BXW6	950 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	MTFR1L	Q9H019	292 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	SATB2	Q9UPW6	733 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	E2F6	O75461	281 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	FAM47E	Q6ZV65	393 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	METTL16	Q86W50	562 aa	Known RBP	13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	PIK3R5	Q8WYR1	880 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	SENP7	Q9BQF6	1050 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	TSSK1B	Q9BXA7	367 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	CAPN11	Q9UMQ6	739 aa		13.83	□□□□□ -0.2
PTPRF-215	ENST00000496447	CAP2	P40123	477 aa		13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	APLF	Q8IW19	511 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	DHX40	Q8IX18	779 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	USP33	Q8TEY7	942 aa		13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	PABPC5	Q96DU9	382 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	ELAC2	Q9BQ52	826 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	DOLK	Q9UPQ8	538 aa		13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	SYNDIG1L	A6NDD5	238 aa		13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	EEF2K	O00418	725 aa	Known RBP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	ICAM1	P05362	532 aa		13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
PTPRF-215	ENST00000496447	NLRP11	P59045	1033 aa	Known RBP	13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms