RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CYP3A5P20815 502 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 MCM4P33991 863 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 KCNA1Q09470 495 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 TMEM132DQ14C87 1099 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 ENOX2Q16206 610 aaKnown RBP17.78■□□□□ 0.44
SF3A1-209ENST00000496189 KIAA0319Q5VV43 1072 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 ANKRD54Q6NXT1 300 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 TAS1R1Q7RTX1 841 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 GRAMD1CQ8IYS0 662 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 ENGASEQ8NFI3 743 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 KLHL5Q96PQ7 755 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 FAM213AQ9BRX8 229 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 FNIP2Q9P278 1114 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 REV3LO60673 3130 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 TISP43B9A030 160 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 GADD45BO75293 160 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 GLUD1P00367 558 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 CNPP09543 421 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 CASP1P29466 404 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 SNRPFP62306 86 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 SOX4Q06945 474 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 DLX2Q07687 328 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 SNW1Q13573 536 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 PSMD5Q16401 504 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 NT5DC4Q86YG4 428 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 SMRP1Q8NCR6 262 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 ZNF507Q8TCN5 953 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 HPS3Q969F9 1004 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 C18orf25Q96B23 403 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 MSLNLQ96KJ4 702 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 POP1Q99575 1024 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 COL25A1Q9BXS0 654 aaPredicted RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 KIAA1586Q9HCI6 787 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 SLC39A2Q9NP94 309 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 CLEC1BQ9P126 229 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 CGNQ9P2M7 1197 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 PRKAG3Q9UGI9 489 aa17.77■□□□□ 0.44
SF3A1-209ENST00000496189 R3HCC1Q9Y3T6 440 aaKnown RBP17.77■□□□□ 0.44
SF3A1-209ENST00000496189 ARHGEF37A1IGU5 675 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 MBTPS2O43462 519 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 FAM189A1O60320 539 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 EFEMP2O95967 443 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 PAX3P23760 479 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 ADSSP30520 456 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 ITIH3Q06033 890 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 SPAG1Q07617 926 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 ZBTB41Q5SVQ8 909 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 JADE1Q6IE81 842 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 ANKS3Q6ZW76 656 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 GPD1LQ8N335 351 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 GOLGA5Q8TBA6 731 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 CACTINQ8WUQ7 758 aaKnown RBP17.76■□□□□ 0.43
SF3A1-209ENST00000496189 PIK3R5Q8WYR1 880 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 SAAL1Q96ER3 474 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 B3GALT6Q96L58 329 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 FBXL18Q96ME1 805 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 FGFBP2Q9BYJ0 223 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 PCIF1Q9H4Z3 704 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 RXFP1Q9HBX9 757 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 RBAKQ9NYW8 714 aaPredicted RBP17.76■□□□□ 0.43
SF3A1-209ENST00000496189 TUBGCP4Q9UGJ1 667 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 C2CD2Q9Y426 696 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 TRIP11Q15643 1979 aa17.76■□□□□ 0.43
SF3A1-209ENST00000496189 H7C4K7 107 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 TEX28O15482 410 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 EXTL3O43909 919 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 LILRB3O75022 631 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 SMC2O95347 1197 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 C1RP00736 705 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 RPN1P04843 607 aaKnown RBP17.75■□□□□ 0.43
SF3A1-209ENST00000496189 ADRB2P07550 413 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 LRPAP1P30533 357 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 SSTR3P32745 418 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-209ENST00000496189 CLCN4P51793 760 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 KCNC3Q14003 757 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 SURF1Q15526 300 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 SMAD2Q15796 467 aaKnown RBP17.75■□□□□ 0.43
SF3A1-209ENST00000496189 KMT5BQ4FZB7 885 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 RTP2Q5QGT7 225 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 EPM2AIP1Q7L775 607 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-209ENST00000496189 NELFCDQ8IXH7 590 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 ELOA2Q8IYF1 753 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-209ENST00000496189 APPL2Q8NEU8 664 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 VN1R2Q8NFZ6 395 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 RIPOR3Q96MK2 946 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 SFXN1Q9H9B4 322 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 RMND1Q9NWS8 449 aa17.75■□□□□ 0.43
SF3A1-209ENST00000496189 BRWD1Q9NSI6 2320 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 ZNF233A6NK53 670 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 SYN3O14994 580 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 IL9P15248 144 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 EPCAMP16422 314 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 BRCC3P46736 316 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 RBM10P98175 930 aaKnown RBP17.74■□□□□ 0.43
SF3A1-209ENST00000496189 EHHADHQ08426 723 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 DPYDQ12882 1025 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 SPATA1Q5VX52 437 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 PRSS55Q6UWB4 352 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-209ENST00000496189 DSTYKQ6XUX3 929 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 GLYCTKQ8IVS8 523 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms