RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SEC14L1Q92503 715 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ZNF668Q96K58 619 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 TIPINQ9BVW5 301 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ATP6V0A4Q9HBG4 840 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 FGFR1OP2Q9NVK5 253 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ANAPC7Q9UJX3 599 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 NF2P35240 595 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ABHD15Q6UXT9 468 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ADAM7Q9H2U9 754 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 R3HDMLQ9H3Y0 253 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 GGA3Q9NZ52 723 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 SYNGAP1Q96PV0 1343 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 PHIPQ8WWQ0 1821 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 A6NNZ2 444 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 MAPK13O15264 365 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 PHF2O75151 1096 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 DGAT1O75907 488 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 RARAP10276 462 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 PTGIRP43119 386 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 SSR1P43307 286 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 EMC2Q15006 297 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 TUBB8Q3ZCM7 444 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 CD101Q93033 1021 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 IFT74Q96LB3 600 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 NAP1L3Q99457 506 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 KLHL11Q9NVR0 708 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 AGAP1Q9UPQ3 857 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 COQ4Q9Y3A0 265 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 TTLL13PA6NNM8 815 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 CHUKO15111 745 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 RRM1P23921 792 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 CHKAP35790 457 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 KCNJ2P63252 427 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 TDRD10Q5VZ19 366 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 DCAF15Q66K64 600 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 FBXL18Q96ME1 805 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 NTPCRQ9BSD7 190 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 HERPUD2Q9BSE4 406 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 TARS2Q9BW92 718 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 TEX13BQ9BXU2 312 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 PABPC3Q9H361 631 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 ACAD9Q9H845 621 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 PDLIM7Q9NR12 457 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 GRHL1Q9NZI5 618 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 ASIC3Q9UHC3 531 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 UMODL1Q5DID0 1318 aa17.63■□□□□ 0.41
CCDC88B-210ENST00000494566 SPDYE16A6NNV3 312 aaPredicted RBP17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 UPP2O95045 317 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 GZMAP12544 262 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 DRP2Q13474 957 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 ERMARDQ5T6L9 678 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 SAMD3Q8N6K7 520 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 SPIRE2Q8WWL2 714 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 FNBP1Q96RU3 617 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 FAM129AQ9BZQ8 928 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 AS3MTQ9HBK9 375 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 ARID2Q68CP9 1835 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 DOCK1Q14185 1865 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 MIF4GDA9UHW6 222 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 TCP11X1B4DZS4 312 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 PPFIA2O75334 1257 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 CYP1A2P05177 515 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 HADHBP55084 474 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 AGBL2Q5U5Z8 902 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 TMEM174Q8WUU8 243 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 CCT6BQ92526 530 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 C1orf112Q9NSG2 853 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 ARHGAP28Q9P2N2 729 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 GTF3C4Q9UKN8 822 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 PNMA3Q9UL41 463 aa17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 DIS3Q9Y2L1 958 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-210ENST00000494566 HLA-DRAP01903 254 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 PIK3CAP42336 1068 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 TREML2Q5T2D2 321 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SWT1Q5T5J6 900 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 ACAD10Q6JQN1 1059 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 FAM47EQ6ZV65 393 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SLC13A5Q86YT5 568 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 STAMBPL1Q96FJ0 436 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 POLR2AP24928 1970 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 RASGRF2O14827 1237 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 TGFB2P61812 414 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 KYNUQ16719 465 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 CLEC16AQ2KHT3 1053 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 ZFYVE27Q5T4F4 411 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 CATSPERGQ6ZRH7 1159 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 HOOK3Q86VS8 718 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SPATS2Q86XZ4 545 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 ANKRD35Q8N283 1001 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 MCPH1Q8NEM0 835 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 TMC2Q8TDI7 906 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 UBOX5O94941 541 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SUPT20HL2P0C7V6 817 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 GLRA2P23416 452 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 RPS12P25398 132 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 MAPK4P31152 587 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SUPT20HL1Q3ZLR7 823 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 BRDTQ58F21 947 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 NUGGCQ68CJ6 796 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 EIF1ADQ8N9N8 165 aaKnown RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms