RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CIITAP33076 1130 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CLK2P49760 499 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PPP3CAQ08209 521 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 XKR3Q5GH77 459 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC47A2Q86VL8 602 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF354CQ86Y25 554 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC5A5Q92911 643 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FAM149B1Q96BN6 582 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KLRG1Q96E93 195 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DTNBP1Q96EV8 351 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NUDCD1Q96RS6 583 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SYT17Q9BSW7 474 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ADARB2Q9NS39 739 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TAS2R14Q9NYV8 317 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SUCLA2Q9P2R7 463 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TTC7AQ9ULT0 858 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MRPL42Q9Y6G3 142 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LRRC10BA6NIK2 292 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SPDYE16A6NNV3 312 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DGAT1O75907 488 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MAP3K6O95382 1288 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MYL3P08590 195 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CUL1Q13616 776 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCDC62Q6P9F0 684 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CATSPER4Q7RTX7 472 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TRPM8Q7Z2W7 1104 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ARHGAP22Q7Z5H3 698 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 YTHDF3Q7Z739 585 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ARHGAP24Q8N264 748 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SEPT1Q8WYJ6 367 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MRIQ9BWK5 157 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NAGPAQ9UK23 515 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 IGLV3-22A0A075B6J6 115 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HIRAP54198 1017 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 EIF3BP55884 814 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SKOR1P84550 965 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LIN9Q5TKA1 542 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ARHGEF19Q8IW93 802 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MMGT1Q8N4V1 131 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C1orf54Q8WWF1 131 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FMO2Q99518 471 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ADPGKQ9BRR6 497 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NUP85Q9BW27 656 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PLVAPQ9BX97 442 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CYP39A1Q9NYL5 469 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FBXL5Q9UKA1 691 aa11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FAF1Q9UNN5 650 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ASTN1O14525 1302 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF263O14978 683 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TGFB1I1O43294 461 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KIZQ2M2Z5 673 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ACBD5Q5T8D3 534 aaPredicted RBP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PCNX4Q63HM2 1172 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AADACL2Q6P093 401 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ANO5Q75V66 913 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TEX9Q8N6V9 391 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C2orf69Q8N8R5 385 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GDAP1Q8TB36 358 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 IQCDQ96DY2 449 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TRIM51Q9BSJ1 452 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 STOML1Q9UBI4 398 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TBK1Q9UHD2 729 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SIK3Q9Y2K2 1263 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 BZW2Q9Y6E2 419 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CNTNAP1P78357 1384 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TTC36A6NLP5 189 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PGRMC1O00264 195 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 IGF2BP3O00425 579 aaKnown RBP eCLIP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ANKRD20A3Q5VUR7 823 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CYP4F22Q6NT55 531 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 EFCAB12Q6NXP0 572 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SYCE1Q8N0S2 351 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GPC2Q8N158 579 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GPD1LQ8N335 351 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCDC33Q8N5R6 958 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RBM46Q8TBY0 533 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NEK9Q8TD19 979 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LRRC8CQ8TDW0 803 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HEXIM2Q96MH2 286 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GMLQ99445 158 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CALN1Q9BXU9 219 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KLK14Q9P0G3 267 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ADAM22Q9P0K1 906 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SEL1LQ9UBV2 794 aa11.4□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PDE2AO00408 941 aaPredicted RBP11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF157P51786 506 aaPredicted RBP11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CPB2Q96IY4 423 aa11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 XPO6Q96QU8 1125 aaKnown RBP11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RRAGCQ9HB90 399 aa11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RAB20Q9NX57 234 aa11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF148Q9UQR1 794 aa11.4□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ADCY8P40145 1251 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TTLL4Q14679 1199 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HSDL1Q3SXM5 330 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CFAP61Q8NHU2 1237 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AFG1LQ8WV93 481 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RUBCNQ92622 972 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NAF1Q96HR8 494 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MTMR12Q9C0I1 747 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms