RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 ATP1A3P13637 1013 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 POU5F1Q01860 360 aaKnown RBP17.03■□□□□ 0.32
HPS4-216ENST00000493455 TUSC3Q13454 348 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 DUOXA2Q1HG44 320 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 TCP11X2Q5H9J9 407 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 CDKAL1Q5VV42 579 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 GAS2L3Q86XJ1 694 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 HASPINQ8TF76 798 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 ZNF516Q92618 1163 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 BORCS6Q96GS4 357 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 PAAF1Q9BRP4 392 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 MSRAQ9UJ68 235 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 YBX2Q9Y2T7 364 aaKnown RBP17.03■□□□□ 0.32
HPS4-216ENST00000493455 DERAQ9Y315 318 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 C2CD2Q9Y426 696 aa17.03■□□□□ 0.32
HPS4-216ENST00000493455 INPPL1O15357 1258 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 STX10O60499 249 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 TPM2P07951 284 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 EEF1GP26641 437 aaKnown RBP17.02■□□□□ 0.32
HPS4-216ENST00000493455 POLR2BP30876 1174 aaKnown RBP17.02■□□□□ 0.32
HPS4-216ENST00000493455 CLCNKBP51801 687 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 PLCB2Q00722 1185 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 PPP3CAQ08209 521 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 KRT31Q15323 416 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 C1orf220Q5T0J3 134 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 PRPF38BQ5VTL8 546 aaKnown RBP17.02■□□□□ 0.32
HPS4-216ENST00000493455 TRIM59Q8IWR1 403 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 SLC35C1Q96A29 364 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 TUBGCP2Q9BSJ2 902 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 PBX4Q9BYU1 374 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 RBSNQ9H1K0 784 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 VPS16Q9H269 839 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 CWH43Q9H720 699 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 PCDHA11Q9Y5I1 949 aa17.02■□□□□ 0.32
HPS4-216ENST00000493455 SCN1AP35498 2009 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 F8W810 466 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 PODXLO00592 558 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 PPEF2O14830 753 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 CSPG5O95196 566 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 AFPP02771 609 aaKnown RBP17.01■□□□□ 0.31
HPS4-216ENST00000493455 PIK3CAP42336 1068 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 SLC11A1P49279 550 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 MXI1P50539 228 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 MARSP56192 900 aaKnown RBP17.01■□□□□ 0.31
HPS4-216ENST00000493455 BCAR1P56945 870 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 MYL7Q01449 175 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 KCNH2Q12809 1159 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 TRPC3Q13507 836 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 NAB2Q15742 525 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 RAB30Q15771 203 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 MAN2A1Q16706 1144 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 TDRD10Q5VZ19 366 aaKnown RBP17.01■□□□□ 0.31
HPS4-216ENST00000493455 SCARA3Q6AZY7 606 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 TRAPPC11Q7Z392 1133 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 NT5DC4Q86YG4 428 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 COLGALT2Q8IYK4 626 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 C1orf127Q8N9H9 656 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 ELMO3Q96BJ8 720 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 HSD3B7Q9H2F3 369 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 PRO3102Q9H379 93 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 CERS4Q9HA82 394 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 AGAP1Q9UPQ3 857 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 FAN1Q9Y2M0 1017 aa17.01■□□□□ 0.31
HPS4-216ENST00000493455 LINC01553A4QN01 128 aa17■□□□□ 0.31
HPS4-216ENST00000493455 NRP1O14786 923 aa17■□□□□ 0.31
HPS4-216ENST00000493455 ARHGEF15O94989 841 aa17■□□□□ 0.31
HPS4-216ENST00000493455 SERPINC1P01008 464 aa17■□□□□ 0.31
HPS4-216ENST00000493455 LAG3P18627 525 aa17■□□□□ 0.31
HPS4-216ENST00000493455 CTNNB1P35222 781 aa17■□□□□ 0.31
HPS4-216ENST00000493455 FMO5P49326 533 aa17■□□□□ 0.31
HPS4-216ENST00000493455 ALDH7A1P49419 539 aaKnown RBP17■□□□□ 0.31
HPS4-216ENST00000493455 DSC1Q08554 894 aa17■□□□□ 0.31
HPS4-216ENST00000493455 ZBTB6Q15916 424 aa17■□□□□ 0.31
HPS4-216ENST00000493455 CBWD6Q4V339 395 aa17■□□□□ 0.31
HPS4-216ENST00000493455 CBWD3Q5JTY5 395 aa17■□□□□ 0.31
HPS4-216ENST00000493455 CBWD5Q5RIA9 395 aa17■□□□□ 0.31
HPS4-216ENST00000493455 KRT39Q6A163 491 aa17■□□□□ 0.31
HPS4-216ENST00000493455 SV2AQ7L0J3 742 aa17■□□□□ 0.31
HPS4-216ENST00000493455 SPRED2Q7Z698 418 aa17■□□□□ 0.31
HPS4-216ENST00000493455 COLGALT1Q8NBJ5 622 aa17■□□□□ 0.31
HPS4-216ENST00000493455 ZNF558Q96NG5 402 aa17■□□□□ 0.31
HPS4-216ENST00000493455 TMEM8AQ9HCN3 771 aa17■□□□□ 0.31
HPS4-216ENST00000493455 KIF4AO95239 1232 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 ALDH2P05091 517 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 GALTP07902 379 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 ZNF18P17022 549 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 CYP3A5P20815 502 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 COPB1P53618 953 aaKnown RBP16.99■□□□□ 0.31
HPS4-216ENST00000493455 AP3M2P53677 418 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 VWA3BQ502W6 1294 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 C9orf57Q5W0N0 161 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 PPP2R2DQ66LE6 453 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 KCNT2Q6UVM3 1135 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 SP7Q8TDD2 431 aaPredicted RBP16.99■□□□□ 0.31
HPS4-216ENST00000493455 RSPH1Q8WYR4 309 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 UROC1Q96N76 676 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 TSPAN18Q96SJ8 248 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 C17orf80Q9BSJ5 609 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 AAASQ9NRG9 546 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 ITGA11Q9UKX5 1188 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms