RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 RHOT2Q8IXI1 618 aa4.47□□□□□ -1.69
PTCD3-218ENST00000493430 ASB10Q8WXI3 467 aa4.47□□□□□ -1.69
PTCD3-218ENST00000493430 NEU1Q99519 415 aa4.47□□□□□ -1.69
PTCD3-218ENST00000493430 TOPORSQ9NS56 1045 aaPredicted RBP4.47□□□□□ -1.69
PTCD3-218ENST00000493430 DPP7Q9UHL4 492 aa4.47□□□□□ -1.69
PTCD3-218ENST00000493430 C9orf84Q5VXU9 1444 aa4.46□□□□□ -1.69
PTCD3-218ENST00000493430 DNMT1P26358 1616 aaKnown RBP4.46□□□□□ -1.69
PTCD3-218ENST00000493430 RNF17Q9BXT8 1623 aaKnown RBP4.46□□□□□ -1.69
PTCD3-218ENST00000493430 ZNF518AQ6AHZ1 1483 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 PLEKHD1A6NEE1 506 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 CXorf49A8MYA2 514 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ADCY6O43306 1168 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ZEB2O60315 1214 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ULK1O75385 1050 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 CDKL5O76039 1030 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ITGAMP11215 1152 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ENPP1P22413 925 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ADSLP30566 484 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 MPLP40238 635 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 MPP3Q13368 585 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 MST1LQ2TV78 715 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 RRP12Q5JTH9 1297 aaKnown RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 GJC2Q5T442 439 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 MED25Q71SY5 747 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ZNF572Q7Z3I7 529 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 MAPKAPK5Q8IW41 473 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 AFAP1Q8N556 730 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 SIMC1Q8NDZ2 872 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 REPS2Q8NFH8 660 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 GPR156Q8NFN8 814 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 OR7D4Q8NG98 312 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 OR56A1Q8NGH5 318 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 RIN2Q8WYP3 895 aaPredicted RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 NELL1Q92832 810 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 TTC1Q99614 292 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 REXO4Q9GZR2 422 aaKnown RBP4.46□□□□□ -1.7
PTCD3-218ENST00000493430 R3HDMLQ9H3Y0 253 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 IFT22Q9H7X7 185 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 RSAD1Q9HA92 442 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 BCO1Q9HAY6 547 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 EDARQ9UNE0 448 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 NOX1Q9Y5S8 564 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 PIK3C2BO00750 1634 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 SPATA31A6Q5VVP1 1343 aa4.46□□□□□ -1.7
PTCD3-218ENST00000493430 ZC3H13Q5T200 1668 aaKnown RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 NEURL4Q96JN8 1562 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 CEP170BQ9Y4F5 1589 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 ATP10AO60312 1499 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 NEMP1O14524 444 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 PLA2G5P39877 138 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 ELLP55199 621 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 CDK17Q00537 523 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 TSHZ3Q63HK5 1081 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 DDX46Q7L014 1031 aaKnown RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 HDGFL2Q7Z4V5 671 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 NPM2Q86SE8 214 aaKnown RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 TRMT2AQ8IZ69 625 aaKnown RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 TMEM132CQ8N3T6 1108 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 CAGE1Q8TC20 777 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 PRDM13Q9H4Q3 707 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 KLHL11Q9NVR0 708 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 TESQ9UGI8 421 aaKnown RBP4.45□□□□□ -1.7
PTCD3-218ENST00000493430 DEPDC5O75140 1603 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 MAST3O60307 1309 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 PNPLA7Q6ZV29 1317 aa4.45□□□□□ -1.7
PTCD3-218ENST00000493430 ARHGEF5Q12774 1597 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ATRNL1Q5VV63 1379 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ALOX15P16050 662 aaPredicted RBP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ZNF37AP17032 561 aaPredicted RBP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 FDXRP22570 491 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ECHS1P30084 290 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 HNRNPMP52272 730 aaKnown RBP eCLIP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 RAP2BP61225 183 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 MRPS9P82933 396 aaKnown RBP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 HNRNPA0Q13151 305 aaKnown RBP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 SP140Q13342 867 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 TAF7LQ5H9L4 462 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 COLEC12Q5KU26 742 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ZKSCAN2Q63HK3 967 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 Q6ZVL8 140 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 DRC7Q8IY82 874 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 SLC44A3Q8N4M1 653 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 CLRN3Q8NCR9 226 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 AUTS2Q8WXX7 1259 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 FATE1Q969F0 183 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 UHRF1Q96T88 793 aaPredicted RBP4.44□□□□□ -1.7
PTCD3-218ENST00000493430 MRI1Q9BV20 369 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 ALOXE3Q9BYJ1 711 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 MOCS1Q9NZB8 636 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 VPS8Q8N3P4 1428 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 E9PCH4 1651 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 MAST1Q9Y2H9 1570 aa4.44□□□□□ -1.7
PTCD3-218ENST00000493430 LRRC9Q6ZRR7 1453 aa4.43□□□□□ -1.7
PTCD3-218ENST00000493430 EIF2AK4Q9P2K8 1649 aaKnown RBP4.43□□□□□ -1.7
PTCD3-218ENST00000493430 MTUS2Q5JR59 1369 aa4.43□□□□□ -1.7
PTCD3-218ENST00000493430 IQGAP1P46940 1657 aa4.43□□□□□ -1.7
PTCD3-218ENST00000493430 A0A1B0GTW7 788 aa4.43□□□□□ -1.7
PTCD3-218ENST00000493430 ELANEP08246 267 aa4.43□□□□□ -1.7
PTCD3-218ENST00000493430 MTHFD2P13995 350 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms