RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 MICAL2O94851 1124 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 RHOP08100 348 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 XBP1P17861 261 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 FCARP24071 287 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 MTAPQ13126 283 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 SLC5A9Q2M3M2 681 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 EARS2Q5JPH6 523 aaKnown RBP9.05□□□□□ -0.96
USP39-216ENST00000490193 LAIR1Q6GTX8 287 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 TANGO2Q6ICL3 276 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 SLC8B1Q6J4K2 584 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 TSSK4Q6SA08 328 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 THSD4Q6ZMP0 1018 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 CENPQQ7L2Z9 268 aaPredicted RBP9.05□□□□□ -0.96
USP39-216ENST00000490193 CELF5Q8N6W0 485 aaKnown RBP9.05□□□□□ -0.96
USP39-216ENST00000490193 MCPH1Q8NEM0 835 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 OXER1Q8TDS5 423 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 TNFRSF25Q93038 417 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 DDX27Q96GQ7 796 aaKnown RBP9.05□□□□□ -0.96
USP39-216ENST00000490193 PLA2G2FQ9BZM2 168 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 C2orf40Q9H1Z8 148 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 CXCL16Q9H2A7 254 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 TRPV5Q9NQA5 729 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 HEBP1Q9NRV9 189 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 SNTG2Q9NY99 539 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 GMEB2Q9UKD1 530 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 USP18Q9UMW8 372 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 PCDHA12Q9UN75 941 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 CYP46A1Q9Y6A2 500 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 RALGAPA1Q6GYQ0 2036 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 DCDC2BA2VCK2 349 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 LRRIQ4A6NIV6 560 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 MAN2B1O00754 1011 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 SLC30A4O14863 429 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 USO1O60763 962 aaKnown RBP9.04□□□□□ -0.96
USP39-216ENST00000490193 REC8O95072 547 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 CEBPBP17676 345 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 PPP2R5DQ14738 602 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 PRSS36Q5K4E3 855 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 CD300LGQ6UXG3 332 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 ANKS3Q6ZW76 656 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 MAP4K3Q8IVH8 894 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 ZBTB8OSQ8IWT0 167 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 ZNF461Q8TAF7 563 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 NETO1Q8TDF5 533 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 ING5Q8WYH8 240 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 MCRS1Q96EZ8 462 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 CCDC43Q96MW1 224 aaKnown RBP9.04□□□□□ -0.96
USP39-216ENST00000490193 UROC1Q96N76 676 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 PPP1R10Q96QC0 940 aaKnown RBP9.04□□□□□ -0.96
USP39-216ENST00000490193 ADPGKQ9BRR6 497 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 CCDC113Q9H0I3 377 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 TTC12Q9H892 705 aaPredicted RBP9.04□□□□□ -0.96
USP39-216ENST00000490193 GPRC5CQ9NQ84 441 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 CDY1Q9Y6F8 540 aa9.04□□□□□ -0.96
USP39-216ENST00000490193 ACKR2O00590 384 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 TRAPPC3O43617 180 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 B3GAT3O94766 335 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 ABLIM3O94929 683 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 PAPSS2O95340 614 aaPredicted RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 RETP07949 1114 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 PTPN2P17706 415 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 IGFBP6P24592 240 aaPredicted RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 TKTP29401 623 aaKnown RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 CCR3P51677 355 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 MLLT6P55198 1093 aaPredicted RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 ROR1Q01973 937 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 SCRN1Q12765 414 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 STK3Q13188 491 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 PRPF4BQ13523 1007 aaKnown RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 CALCRLQ16602 461 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 MAPK6Q16659 721 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 UPP1Q16831 310 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 DCAF4L1Q3SXM0 396 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 NOSTRINQ8IVI9 506 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 TCEAL8Q8IYN2 117 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 C3orf58Q8NDZ4 430 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 PIGOQ8TEQ8 1089 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 IRF7Q92985 503 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 ASB16Q96NS5 453 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 MTMR9Q96QG7 549 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 TRMT61BQ9BVS5 477 aaKnown RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 GJB4Q9NTQ9 266 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 RALYQ9UKM9 306 aaKnown RBP9.03□□□□□ -0.96
USP39-216ENST00000490193 RAB23Q9ULC3 237 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 CITO14578 2027 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 GREB1Q4ZG55 1949 aa9.03□□□□□ -0.96
USP39-216ENST00000490193 WDR27A2RRH5 827 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 ZNF197O14709 1029 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 NEMFO60524 1076 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 FOXD2O60548 495 aaPredicted RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 LRG1P02750 347 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 EDN1P05305 212 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 PRKCBP05771 671 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 SPATA31C1P0DKV0 1188 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 ATF2P15336 505 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 NAMPTP43490 491 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 CLCNKBP51801 687 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 EPHA5P54756 1037 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 SPEM2Q0P670 501 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 NR5A1Q13285 461 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms