RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SLC16A3O15427 465 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CYTH3O43739 400 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TRIM49P0CI25 452 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TRIM49CP0CI26 452 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 KDSRQ06136 332 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CBX3Q13185 183 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PKN2Q16513 984 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TRMT5Q32P41 509 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 SYDE1Q6ZW31 735 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 STXBP4Q6ZWJ1 553 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 LRRC6Q86X45 466 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 HIPK4Q8NE63 616 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF75CPQ92670 426 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 GATA6Q92908 595 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TTC17Q96AE7 1141 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MIPEPQ99797 713 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 SIKE1Q9BRV8 207 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 Q9H521 79 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 DNAJC18Q9H819 358 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 GPCPD1Q9NPB8 672 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 LGALS13Q9UHV8 139 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MTO1Q9Y2Z2 717 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TJP1Q07157 1748 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 M0R2N6 131 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PDXKO00764 312 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 NDC80O14777 642 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 DKC1O60832 514 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 USP1O94782 785 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ADAMTS2O95450 1211 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ASMTLO95671 621 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 T-ENOLP0DO92 83 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ZFXP17010 805 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 RPA3P35244 121 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MTA1Q13330 715 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 WDR72Q3MJ13 1102 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 TNFAIP8L3Q5GJ75 292 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 POTEGQ6S5H5 508 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SCUBE1Q8IWY4 988 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 IFT43Q96FT9 208 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 DNAJC1Q96KC8 554 aaKnown RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 BTBD6Q96KE9 485 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 TMEM120AQ9BXJ8 343 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 HEMGNQ9BXL5 484 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 KCTD10Q9H3F6 313 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SMYD3Q9H7B4 428 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 THEGQ9P2T0 379 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 CIDEBQ9UHD4 219 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF232Q9UNY5 417 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 GMEB1Q9Y692 573 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 BAZ2AQ9UIF9 1905 aaKnown RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 BRWD3Q6RI45 1802 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 GOLGA8RI6L899 631 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PGM3O95394 542 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ASLP04424 464 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 CYP11B2P19099 503 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 BPIFB4P59827 614 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MECOMQ03112 1051 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MOGSQ13724 837 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 DDB1Q16531 1140 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 GRAMD4Q6IC98 578 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 B3GNT6Q6ZMB0 384 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF554Q86TJ5 538 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 TRABD2AQ86V40 505 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SLC25A41Q8N5S1 370 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MYCT1Q8N699 235 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PIP4K2CQ8TBX8 421 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SLC26A7Q8TE54 656 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SLC20A1Q8WUM9 679 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SLC35C1Q96A29 364 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 FAM118BQ9BPY3 351 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 UBE2TQ9NPD8 197 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 COG5Q9UP83 839 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ARHGAP10A1A4S6 786 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 TRAFD1O14545 582 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PDE5AO76074 875 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 AMPD1P23109 780 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MAPK4P31152 587 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 FMO5P49326 533 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 GALK1P51570 392 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PLCB3Q01970 1234 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 BTKQ06187 659 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 TRIP10Q15642 601 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 DNAL1Q4LDG9 190 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 SLC44A5Q8NCS7 719 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 RFWD2Q8NHY2 731 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PPP1R14CQ8TAE6 165 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF398Q8TD17 642 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 RPGRQ92834 1020 aaKnown RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 MTMR9Q96QG7 549 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 NAP1L4Q99733 375 aaKnown RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 FBXO6Q9NRD1 293 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 ARMCX1Q9P291 453 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PSMC3IPQ9P2W1 217 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-209ENST00000487188 APEX2Q9UBZ4 518 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PCDHGA4Q9Y5G9 962 aa6.6□□□□□ -1.35
VPS13D-209ENST00000487188 PALM3A6NDB9 673 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 FCHO1O14526 889 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SORBS3O60504 671 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ZBTB48P10074 688 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ALAS1P13196 640 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms