RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 BTG3Q14201 252 aaPredicted RBP13.22□□□□□ -0.29
SDC1-206ENST00000482879 NAB2Q15742 525 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 UVSSAQ2YD98 709 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 FILIP1LQ4L180 1135 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 MIIPQ5JXC2 388 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 KRT39Q6A163 491 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 SV2AQ7L0J3 742 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 TRAPPC11Q7Z392 1133 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 ZNF280BQ86YH2 543 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 CMTR2Q8IYT2 770 aaKnown RBP13.22□□□□□ -0.29
SDC1-206ENST00000482879 LRRC43Q8N309 656 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 TMEM130Q8N3G9 435 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 GOLGA2P5Q9HBQ8 144 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 TMEM8AQ9HCN3 771 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 TUBGCP4Q9UGJ1 667 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 INSL6Q9Y581 213 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.22□□□□□ -0.29
SDC1-206ENST00000482879 TNRC18O15417 2968 aaPredicted RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 TLL1O43897 1013 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 N4BP1O75113 896 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 KRT19P08727 400 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 MXI1P50539 228 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 UBASH3AP57075 661 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 HTRA4P83105 476 aaPredicted RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 MYL7Q01449 175 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 CETN1Q12798 172 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 TRPC3Q13507 836 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 ZACNQ401N2 412 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 CBWD6Q4V339 395 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 CBWD3Q5JTY5 395 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 CBWD5Q5RIA9 395 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 SPOUT1Q5T280 376 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 TDRD10Q5VZ19 366 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 C15orf39Q6ZRI6 1047 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 APTXQ7Z2E3 356 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 C1orf127Q8N9H9 656 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 NAP1L5Q96NT1 182 aaPredicted RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 RAD9AQ99638 391 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 NRDE2Q9H7Z3 1164 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 RC3H2Q9HBD1 1191 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 ITGA11Q9UKX5 1188 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 AGAP1Q9UPQ3 857 aa13.21□□□□□ -0.29
SDC1-206ENST00000482879 R3HCC1Q9Y3T6 440 aaKnown RBP13.21□□□□□ -0.29
SDC1-206ENST00000482879 COL4A6Q14031 1691 aa13.21□□□□□ -0.3
SDC1-206ENST00000482879 MYO9BQ13459 2157 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 GOLGA6L3A6NEY3 463 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 CASTOR2A6NHX0 329 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 LGALS16A8MUM7 142 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 GRXCR1A8MXD5 290 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 P4HA2O15460 535 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 B4GALT3O60512 393 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 VNN1O95497 513 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 CST3P01034 146 aaPredicted RBP13.2□□□□□ -0.3
SDC1-206ENST00000482879 HLA-DRAP01903 254 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 ITGB3P05106 788 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 LRPAP1P30533 357 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 POLR2BP30876 1174 aaKnown RBP13.2□□□□□ -0.3
SDC1-206ENST00000482879 RPL9P32969 192 aaKnown RBP13.2□□□□□ -0.3
SDC1-206ENST00000482879 OR1G1P47890 313 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 RABGGTBP53611 331 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 RBP5P82980 135 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 DSC1Q08554 894 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 FKBP15Q5T1M5 1219 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 C9orf57Q5W0N0 161 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 COLGALT2Q8IYK4 626 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 FIBCD1Q8N539 461 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 DDX27Q96GQ7 796 aaKnown RBP13.2□□□□□ -0.3
SDC1-206ENST00000482879 UROC1Q96N76 676 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 CWH43Q9H720 699 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 RTN4Q9NQC3 1192 aaKnown RBP13.2□□□□□ -0.3
SDC1-206ENST00000482879 IFNKQ9P0W0 207 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 HCSTQ9UBK5 93 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 CACNG4Q9UBN1 327 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 DNAJB4Q9UDY4 337 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 SIX4Q9UIU6 781 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 KIAA1671Q9BY89 1806 aa13.2□□□□□ -0.3
SDC1-206ENST00000482879 A0A1B0GTH6 734 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.19□□□□□ -0.3
SDC1-206ENST00000482879 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.19□□□□□ -0.3
SDC1-206ENST00000482879 ANO9A1A5B4 782 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 PODXLO00592 558 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 PIRO00625 290 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 PMM2O15305 246 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 ZC3H11AO75152 810 aaKnown RBP eCLIP13.19□□□□□ -0.3
SDC1-206ENST00000482879 ALDH2P05091 517 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 PIK3CAP42336 1068 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 CLCNKBP51801 687 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 UBXN1Q04323 297 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 NCOA4Q13772 614 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 SCARA3Q6AZY7 606 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 FAM109BQ6ICB4 259 aaPredicted RBP13.19□□□□□ -0.3
SDC1-206ENST00000482879 GBP6Q6ZN66 633 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 TDHQ8IZJ6 230 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 FBXL13Q8NEE6 735 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 CXorf38Q8TB03 319 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 TAS1R2Q8TE23 839 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 RABGGTAQ92696 567 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 PAAF1Q9BRP4 392 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 TMEM175Q9BSA9 504 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms