RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 PMM2O15305 246 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 ZNF500O60304 480 aaPredicted RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 DDHD2O94830 711 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 FAM163BP0C2L3 166 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TMEM191BP0C7N4 346 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TNNI1P19237 187 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 OR1G1P47890 313 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 VAMP7P51809 220 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 BCAR1P56945 870 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 RBP5P82980 135 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TAP1Q03518 808 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TYRO3Q06418 890 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 CETN1Q12798 172 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 BFSP1Q12934 665 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 NAB2Q15742 525 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 DPCR1Q3MIW9 517 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 EPC2Q52LR7 807 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 SEZ6Q53EL9 994 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 SMYD5Q6GMV2 418 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 PDXDC1Q6P996 788 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TMCO2Q7Z6W1 182 aaPredicted RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 CBWD2Q8IUF1 395 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 COLGALT1Q8NBJ5 622 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 RDH13Q8NBN7 331 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 TMEM169Q96HH4 297 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 FAXDC2Q96IV6 333 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 ZNF560Q96MR9 790 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 CGRRF1Q99675 332 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 SRRTQ9BXP5 876 aaKnown RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 ZNF576Q9H609 170 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 INTS13Q9NVM9 706 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 ARMCX3Q9UH62 379 aaPredicted RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 ITGA11Q9UKX5 1188 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 CTNND2Q9UQB3 1225 aa8.93□□□□□ -0.98
USP54-212ENST00000480210 YBX2Q9Y2T7 364 aaKnown RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 MTCL1Q9Y4B5 1905 aaKnown RBP8.93□□□□□ -0.98
USP54-212ENST00000480210 PLXNA4Q9HCM2 1894 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 TRIM49BA6NDI0 452 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 PIRO00625 290 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 P4HA2O15460 535 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 N4BP1O75113 896 aaKnown RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 ZC3H11AO75152 810 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-212ENST00000480210 TADA2AO75478 443 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 AKAP3O75969 853 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 ATICP31939 592 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 CTNNB1P35222 781 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 PBX2P40425 430 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 GATMP50440 423 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 SPAG1Q07617 926 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 PTPROQ16827 1216 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 UPP1Q16831 310 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 CCDC40Q4G0X9 1142 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 ZBTB41Q5SVQ8 909 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 JADE1Q6IE81 842 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 DDX53Q86TM3 631 aaKnown RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 ZNF280BQ86YH2 543 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 SLC39A11Q8N1S5 342 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 LRRC52Q8N7C0 313 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 FBXO22Q8NEZ5 403 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 ANKRD20A12PQ8NF67 263 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 SPATA18Q8TC71 538 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 TAF4BQ92750 862 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 BORCS6Q96GS4 357 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 IGSF21Q96ID5 467 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 ZMAT2Q96NC0 199 aaKnown RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 DUSP9Q99956 384 aaKnown RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 OXCT2Q9BYC2 517 aaPredicted RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 IKZF4Q9H2S9 585 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 PDE11AQ9HCR9 933 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 DPP3Q9NY33 737 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 PCDH10Q9P2E7 1040 aa8.92□□□□□ -0.98
USP54-212ENST00000480210 MAGEC2Q9UBF1 373 aaPredicted RBP8.92□□□□□ -0.98
USP54-212ENST00000480210 ANO9A1A5B4 782 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 LCHNA4D1U4 455 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 PODXLO00592 558 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 SYN3O14994 580 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 LPXNO60711 386 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 FGF18O76093 207 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 B3GAT3O94766 335 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 STAU1O95793 577 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 C1RP00736 705 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 LINC00271P0C7V0 271 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 DLATP10515 647 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 MYOGP15173 224 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 POU3F3P20264 500 aaPredicted RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 EEF1GP26641 437 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 SLC11A1P49279 550 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 CASP4P49662 377 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 TAF6P49848 677 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 AFF1P51825 1210 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 PMS1P54277 932 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 STX17P56962 302 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 TPM4P67936 248 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 TFAMQ00059 246 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 MYL5Q02045 173 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 CREMQ03060 361 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 MYO1EQ12965 1108 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 GPM6BQ13491 265 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 TRPC3Q13507 836 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 ZSCAN23Q3MJ62 389 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms