RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 RLN3Q8WXF3 142 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 PGBD4Q96DM1 585 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 TMEM209Q96SK2 561 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 SH2D3AQ9BRG2 576 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 TTPALQ9BTX7 342 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 COLEC11Q9BWP8 271 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 APOL6Q9BWW8 343 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 GTPBP2Q9BX10 602 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 NUSAP1Q9BXS6 441 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 GCOM2Q9BZD3 368 aaPredicted RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 ZBTB40Q9NUA8 1239 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 DNAAF2Q9NVR5 837 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 CEP72Q9P209 647 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 NXF1Q9UBU9 619 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 IL17BQ9UHF5 180 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 PILRBQ9UKJ0 227 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 PCDHA6Q9UN73 950 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 IPPQ9Y573 584 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 PCDHA8Q9Y5H6 950 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 FBN3Q75N90 2809 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 NID2Q14112 1375 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 CEP192Q8TEP8 1941 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 F8P00451 2351 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 IGLV3-22A0A075B6J6 115 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 IGKV6-21A0A0C4DH24 114 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 FAM86B1E9PN63 330 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 ERVH48-1M5A8F1 160 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 MEIS1O00470 390 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 TERTO14746 1132 aaKnown RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 TNFRSF10BO14763 440 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 OPHN1O60890 802 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 MICAL2O94851 1124 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 STBD1O95210 358 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 PRAMEF12O95522 483 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CFIP05156 583 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 FAM86B2P0C5J1 330 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 ATXN1LP0C7T5 689 aaKnown RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 CHRM1P11229 460 aaPredicted RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 C6P13671 934 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 PTPN2P17706 415 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 SFPQP23246 707 aaKnown RBP eCLIP5.4□□□□□ -1.54
USP4-209ENST00000475873 DGKEP52429 567 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 EPHA5P54756 1037 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CLDN6P56747 220 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 TLE3Q04726 772 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CEP55Q53EZ4 464 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 C1orf228Q6PIY5 440 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CD300LGQ6UXG3 332 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CYB5R4Q7L1T6 521 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 SYT13Q7L8C5 426 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CATSPER4Q7RTX7 472 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CEP57Q86XR8 500 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 NAXDQ8IW45 347 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 HDDC3Q8N4P3 179 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 MDGA1Q8NFP4 955 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 RPLP0P6Q8NHW5 317 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 RIN3Q8TB24 985 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 BAHD1Q8TBE0 780 aaPredicted RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 TTC9Q92623 222 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 POLR3CQ9BUI4 534 aaPredicted RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 LRRC3Q9BY71 257 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 NXF3Q9H4D5 531 aaKnown RBP5.4□□□□□ -1.54
USP4-209ENST00000475873 HPS4Q9NQG7 708 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 MTRRQ9UBK8 725 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 GABBR1Q9UBS5 961 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 PCOLCE2Q9UKZ9 415 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 CDY1Q9Y6F8 540 aa5.4□□□□□ -1.54
USP4-209ENST00000475873 NUP210Q8TEM1 1887 aaPredicted RBP5.4□□□□□ -1.55
USP4-209ENST00000475873 SPENQ96T58 3664 aaKnown RBP5.4□□□□□ -1.55
USP4-209ENST00000475873 SF3B1O75533 1304 aaKnown RBP eCLIP5.4□□□□□ -1.55
USP4-209ENST00000475873 CENPEQ02224 2701 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 hCG_1642624A0A1W2PR95 340 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 CAPN8A6NHC0 703 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 CASTOR2A6NHX0 329 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 PLK4O00444 970 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 TRDMT1O14717 391 aaKnown RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 ZNF213O14771 459 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 HMMRO75330 724 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 OATP04181 439 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 ITGA4P13612 1032 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 FGFR3P22607 806 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 AKAP5P24588 427 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 TMOD1P28289 359 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 KIF5BP33176 963 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 P2RY2P41231 377 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 ROR1Q01973 937 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 PRKCEQ02156 737 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 MAPK8IP2Q13387 824 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 HNRNPDQ14103 355 aaKnown RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 HSP90AA2PQ14568 343 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 NAB2Q15742 525 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 MAPK6Q16659 721 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 TAF1BQ53T94 588 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 IFIT1BQ5T764 474 aaKnown RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 ANO7Q6IWH7 933 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 TYW1BQ6NUM6 668 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 MIS18BP1Q6P0N0 1132 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 PDZD4Q76G19 769 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 ARID3BQ8IVW6 561 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 ZNF710Q8N1W2 664 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms