RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP39-214ENST00000474572 PRMT7Q9NVM4 692 aaPredicted RBP10.51□□□□□ -0.73
USP39-214ENST00000474572 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.51□□□□□ -0.73
USP39-214ENST00000474572 CNOT8Q9UFF9 292 aaKnown RBP10.51□□□□□ -0.73
USP39-214ENST00000474572 NUB1Q9Y5A7 615 aa10.51□□□□□ -0.73
USP39-214ENST00000474572 CCL15-CCL14A0A0B4J2E2 113 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 A0A0U1RQG5 324 aaPredicted RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 MAGEB2O15479 319 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 SNAI1O95863 264 aaPredicted RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 POTEJP0CG39 1038 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 ITGA4P13612 1032 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 RNASE9P60153 205 aaKnown RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 MRPS25P82663 173 aaKnown RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 PTP4A2Q12974 167 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 CCL15Q16663 113 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 AMHR2Q16671 573 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 CYP1B1Q16678 543 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 PTPROQ16827 1216 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 FAM110CQ1W6H9 321 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 ATF7IP2Q5U623 682 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 WDR78Q5VTH9 848 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 ALS2CLQ60I27 953 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 EFCAB12Q6NXP0 572 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 MAATS1Q7Z4T9 603 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 PHF13Q86YI8 300 aaPredicted RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 CD302Q8IX05 232 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 KLHL7Q8IXQ5 586 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 EFCAB13Q8IY85 973 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 UBL4BQ8N7F7 174 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 RBBP8NLQ8NC74 664 aaPredicted RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 TSEN2Q8NCE0 465 aaKnown RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 CCDC26Q8TAB7 109 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 TRAPPC12Q8WVT3 735 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 KRT35Q92764 455 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 EXOC4Q96A65 974 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 ELMO3Q96BJ8 720 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 C16orf70Q9BSU1 422 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 AP1M1Q9BXS5 423 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 CDT1Q9H211 546 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 RNPEPQ9H4A4 650 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.5□□□□□ -0.73
USP39-214ENST00000474572 PCDHA3Q9Y5H8 950 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 TRPM7Q96QT4 1865 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 UMODL1Q5DID0 1318 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 MROH7Q68CQ1 1323 aa10.5□□□□□ -0.73
USP39-214ENST00000474572 FAM187AA6NFU0 413 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 POLR3GO15318 223 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 ATMINO43313 823 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 PHF2O75151 1096 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 IL18RAPO95256 599 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 CST3P01034 146 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 FGGP02679 453 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 SRGAP2CP0DJJ0 459 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 MCF2P10911 925 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 INSRRP14616 1297 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 GNA15P30679 374 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 CDH5P33151 784 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 CYP2C19P33261 490 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 HSPA9P38646 679 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 SLC1A1P43005 524 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 MARCKSL1P49006 195 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 CLCN3P51790 818 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 C1QBPQ07021 282 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 DHX34Q14147 1143 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 MESDQ14696 234 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 SIX1Q15475 284 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 DUOXA2Q1HG44 320 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 SEZ6Q53EL9 994 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 HSP90B2PQ58FF3 399 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 SPRYD7Q5W111 196 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 EEF1DP3Q658K8 133 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 MAP1SQ66K74 1059 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 GPR142Q7Z601 462 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 RHPN2Q8IUC4 686 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 C12orf50Q8NA57 414 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 MAML3Q96JK9 1138 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 IMPG2Q9BZV3 1241 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 DDX47Q9H0S4 455 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 IFT122Q9HBG6 1241 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 GBA2Q9HCG7 927 aaPredicted RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 ERVK-5Q9HDB9 667 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 ZCCHC17Q9NP64 241 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 NFU1Q9UMS0 254 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 FAN1Q9Y2M0 1017 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 NR2E1Q9Y466 385 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 PCDHB4Q9Y5E5 795 aa10.49□□□□□ -0.73
USP39-214ENST00000474572 PDCD11Q14690 1871 aaKnown RBP10.49□□□□□ -0.73
USP39-214ENST00000474572 TULP1O00294 542 aaPredicted RBP10.48□□□□□ -0.73
USP39-214ENST00000474572 PHACTR2O75167 634 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 CALCAP01258 141 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 FAM153BP0C7A2 387 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 HARSP12081 509 aaKnown RBP10.48□□□□□ -0.73
USP39-214ENST00000474572 RRM1P23921 792 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 MAN1A1P33908 653 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 ADCYAP1R1P41586 468 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 PHKA2P46019 1235 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 DRG2P55039 364 aaKnown RBP10.48□□□□□ -0.73
USP39-214ENST00000474572 TNFAIP2Q03169 654 aa10.48□□□□□ -0.73
USP39-214ENST00000474572 ZNF211Q13398 564 aaPredicted RBP10.48□□□□□ -0.73
USP39-214ENST00000474572 SGSM1Q2NKQ1 1148 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms