RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 SREBF2Q12772 1141 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 DAAM2Q86T65 1068 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 LRRC57Q8N9N7 239 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 TMEM40Q8WWA1 233 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 CTNNBL1Q8WYA6 563 aaPredicted RBP6.69□□□□□ -1.34
CLK1-210ENST00000473565 DDX1Q92499 740 aaKnown RBP6.69□□□□□ -1.34
CLK1-210ENST00000473565 CCDC102AQ96A19 550 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 PARD6BQ9BYG5 372 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 NXF1Q9UBU9 619 aaKnown RBP6.69□□□□□ -1.34
CLK1-210ENST00000473565 POLIQ9UNA4 740 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 TNFSF13BQ9Y275 285 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 TMEM88BA6NKF7 163 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 CA12O43570 354 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 ZEB2O60315 1214 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 ERLIN2O94905 339 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 CLTAP09496 248 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 TMEM191BP0C7N4 346 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 CCDC172P0C7W6 258 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 ELNP15502 786 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 PSEN2P49810 448 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 GCNT1Q02742 428 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 FSCN1Q16658 493 aaKnown RBP6.69□□□□□ -1.34
CLK1-210ENST00000473565 C10orf76Q5T2E6 689 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 MEI1Q5TIA1 1274 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 WDR49Q8IV35 697 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 CPA5Q8WXQ8 436 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 AP5M1Q9H0R1 490 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 ZNF446Q9NWS9 450 aa6.69□□□□□ -1.34
CLK1-210ENST00000473565 COL1A2P08123 1366 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 KCNK3O14649 394 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 TMEM253P0C7T8 217 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 H2AFXP16104 143 aaPredicted RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 TM4SF4P48230 202 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 CDH8P55286 799 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 INHBEP58166 350 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 HTRA3P83110 453 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 CDR2Q01850 454 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 DUOXA2Q1HG44 320 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 SLC10A6Q3KNW5 377 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 JADE1Q6IE81 842 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 CXCL17Q6UXB2 119 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 TXLNBQ8N3L3 684 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 MSL3Q8N5Y2 521 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 SOCS4Q8WXH5 440 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 APOL6Q9BWW8 343 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 EIF2AQ9BY44 585 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 RPF1Q9H9Y2 349 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 ZCCHC17Q9NP64 241 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 CTTNBP2NLQ9P2B4 639 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 CITO14578 2027 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 SPDYE4A6NLX3 237 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 NPTXRO95502 500 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 ASS1P00966 412 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 ITGB3P05106 788 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 SCP2P22307 547 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 ANXA13P27216 316 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 TRPC3Q13507 836 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 GLRA4Q5JXX5 417 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 CATSPER4Q7RTX7 472 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 RBBP8NLQ8NC74 664 aaPredicted RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 RFFLQ8WZ73 363 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 RABGGTAQ92696 567 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 TRIM7Q9C029 511 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 ADAMTS10Q9H324 1103 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 SIX4Q9UIU6 781 aa6.68□□□□□ -1.34
CLK1-210ENST00000473565 MKI67P46013 3256 aaKnown RBP6.68□□□□□ -1.34
CLK1-210ENST00000473565 ANKRD62A6NC57 917 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 GPR32O75388 356 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 KIF4AO95239 1232 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 GJB6O95452 261 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 HOXA11P31270 313 aaPredicted RBP6.67□□□□□ -1.34
CLK1-210ENST00000473565 MARCKSL1P49006 195 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 VSNL1P62760 191 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 LACTBP83111 547 aaPredicted RBP6.67□□□□□ -1.34
CLK1-210ENST00000473565 LLGL1Q15334 1064 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 ZNF699Q32M78 642 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 GNASQ5JWF2 1037 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 CCDC181Q5TID7 509 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 DAB2IPQ5VWQ8 1189 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 NAA35Q5VZE5 725 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 PEX26Q7Z412 305 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 GSPT2Q8IYD1 628 aaKnown RBP6.67□□□□□ -1.34
CLK1-210ENST00000473565 C1orf127Q8N9H9 656 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 SMC1BQ8NDV3 1235 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 HDAC7Q8WUI4 952 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 ZNF653Q96CK0 615 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 CYFIP2Q96F07 1278 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 ZSWIM1Q9BR11 485 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 NFKBIZQ9BYH8 718 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 XYLT2Q9H1B5 865 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 ISCUQ9H1K1 167 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 PDCL3Q9H2J4 239 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 SNTG2Q9NY99 539 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 NCANO14594 1321 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 BTNL10A8MVZ5 291 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 ZC3H11AO75152 810 aaKnown RBP eCLIP6.67□□□□□ -1.341e-16■■■□□ 18.6
CLK1-210ENST00000473565 IGHA2P01877 340 aa6.67□□□□□ -1.34
CLK1-210ENST00000473565 IBSPP21815 317 aaPredicted RBP6.67□□□□□ -1.34
CLK1-210ENST00000473565 BRD2P25440 801 aaKnown RBP6.67□□□□□ -1.34
CLK1-210ENST00000473565 CCND3P30281 292 aaPredicted RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms