RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 FLCNQ8NFG4 579 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 NXPE3Q969Y0 559 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 HCFC1R1Q9NWW0 138 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 LARSQ9P2J5 1176 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 TUBGCP4Q9UGJ1 667 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 KCNG1Q9UIX4 513 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 FBXL21Q9UKT6 434 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 ODF2LQ9ULJ1 636 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 RIF1Q5UIP0 2472 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 TSC2P49815 1807 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 PI15O43692 258 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 TBC1D4O60343 1298 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 XYLBO75191 536 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 BMP15O95972 392 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 CFHP08603 1231 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 CXCL8P10145 99 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 SRFP11831 508 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 PLCG1P19174 1290 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 AOC1P19801 751 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 UBA7P41226 1012 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 ZNF131P52739 623 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 KARSQ15046 597 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 SF3A1Q15459 793 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 VARS2Q5ST30 1063 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 HAUS6Q7Z4H7 955 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 TMEM130Q8N3G9 435 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 ST13P5Q8NFI4 369 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 CALML4Q96GE6 196 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 ZFP37Q9Y6Q3 630 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 NUMBLQ9Y6R0 609 aa20.53■□□□□ 0.88
CCDC88B-206ENST00000473405 KRBA1A5PL33 1030 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 CLDN3O15551 220 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 FAM189A1O60320 539 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 RPL9P32969 192 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 LONP1P36776 959 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 ROR1Q01973 937 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 UVSSAQ2YD98 709 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 ITFG1Q8TB96 612 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 FGF13Q92913 245 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 FGF14Q92915 247 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 WNT16Q9UBV4 365 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 CDH7Q9ULB5 785 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 POLIQ9UNA4 740 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 DMXL1Q9Y485 3027 aa20.52■□□□□ 0.88
CCDC88B-206ENST00000473405 COL4A3Q01955 1670 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 TTC26A0AVF1 554 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 WDR27A2RRH5 827 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 VPS37CA5D8V6 355 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 H0YCG3 227 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 SYN3O14994 580 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 MRPL58Q14197 206 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 DHX8Q14562 1220 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 MCM6Q14566 821 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 RTL10Q7L3V2 364 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 ZNF461Q8TAF7 563 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 RAD54LQ92698 747 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 ATOH1Q92858 354 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 SUSD3Q96L08 255 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 IRF2BPLQ9H1B7 796 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 DNMT3BQ9UBC3 853 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 GVINP1Q7Z2Y8 2422 aa20.51■□□□□ 0.87
CCDC88B-206ENST00000473405 K7ENM7 598 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 ABLIM3O94929 683 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 PIGRP01833 764 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 TNFSF9P41273 254 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 SPAG1Q07617 926 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 ZBTB41Q5SVQ8 909 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 PARM1Q6UWI2 310 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 GPR152Q8TDT2 470 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 BICD1Q96G01 975 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 FIZ1Q96SL8 496 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 RPP25Q9BUL9 199 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 PARVGQ9HBI0 331 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 TBX20Q9UMR3 447 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 NUB1Q9Y5A7 615 aa20.5■□□□□ 0.87
CCDC88B-206ENST00000473405 HNRNPDLO14979 420 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 CLTAP09496 248 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 MATR3P43243 847 aaKnown RBP eCLIP20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 PTPAQ15257 358 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 PABPC1LQ4VXU2 614 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 NPAS3Q8IXF0 933 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 MYCT1Q8N699 235 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 PLEKHA5Q9HAU0 1116 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 SLC2A4RGQ9NR83 387 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 FBXL5Q9UKA1 691 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 CA14Q9ULX7 337 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 CLIC4Q9Y696 253 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 MIA3Q5JRA6 1907 aa20.49■□□□□ 0.87
CCDC88B-206ENST00000473405 ARHGEF37A1IGU5 675 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 FAM13AO94988 1023 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 ATF2P15336 505 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 SCP2P22307 547 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 LRPAP1P30533 357 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 MCM4P33991 863 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 LIG4P49917 911 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 ZBTB6Q15916 424 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 ENOX2Q16206 610 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 SLC5A9Q2M3M2 681 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 SLC39A4Q6P5W5 647 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 USP49Q70CQ1 688 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms