RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PI15O43692 258 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 CFHP08603 1231 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 LAMP2P13473 410 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 MATR3P43243 847 aaKnown RBP eCLIP18.21■□□□□ 0.512e-6■■■□□ 18.6
USP40-212ENST00000473191 MRE11P49959 708 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 ZC2HC1CQ53FD0 456 aaPredicted RBP18.21■□□□□ 0.51
USP40-212ENST00000473191 VARS2Q5ST30 1063 aaKnown RBP18.21■□□□□ 0.51
USP40-212ENST00000473191 CYP26C1Q6V0L0 522 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 ITFG1Q8TB96 612 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 BICD1Q96G01 975 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 ZHX3Q9H4I2 956 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 LARSQ9P2J5 1176 aaKnown RBP18.21■□□□□ 0.51
USP40-212ENST00000473191 DNMT3BQ9UBC3 853 aaKnown RBP18.21■□□□□ 0.51
USP40-212ENST00000473191 ODF2LQ9ULJ1 636 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 TBX20Q9UMR3 447 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 WDR27A2RRH5 827 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 NRG2O14511 850 aaPredicted RBP18.2■□□□□ 0.5
USP40-212ENST00000473191 TBC1D4O60343 1298 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 FAM13AO94988 1023 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 ARPP19P56211 112 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 ROR1Q01973 937 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 LIN9Q5TKA1 542 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 ELMSAN1Q6PJG2 1045 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 SLC44A3Q8N4M1 653 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 RASSF8Q8NHQ8 419 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 LARP4BQ92615 738 aaKnown RBP18.2■□□□□ 0.5
USP40-212ENST00000473191 STAMQ92783 540 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 CCSER1Q9C0I3 900 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 SLC38A7Q9NVC3 462 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 MTMR6Q9Y217 621 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 BACE2Q9Y5Z0 518 aa18.2■□□□□ 0.5
USP40-212ENST00000473191 A0A087X0B3 334 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 TTC26A0AVF1 554 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 KRBA1A5PL33 1030 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 LACTBL1A8MY62 500 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 ANKRD63C9JTQ0 380 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 H0Y858 1186 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 PPEF2O14830 753 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 TRAK2O60296 914 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 FSHRP23945 695 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 MRPL58Q14197 206 aaKnown RBP18.19■□□□□ 0.5
USP40-212ENST00000473191 ZBTB6Q15916 424 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 ENOX2Q16206 610 aaKnown RBP18.19■□□□□ 0.5
USP40-212ENST00000473191 PARM1Q6UWI2 310 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 ANKS3Q6ZW76 656 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 DYMQ7RTS9 669 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 FLCNQ8NFG4 579 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 FGF14Q92915 247 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 KCNN1Q92952 543 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 USP28Q96RU2 1077 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 PARVGQ9HBI0 331 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 IGSF9Q9P2J2 1179 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 NUMBLQ9Y6R0 609 aa18.19■□□□□ 0.5
USP40-212ENST00000473191 ANHXE9PGG2 379 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 SLC26A4O43511 780 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 TRAPPC3O43617 180 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 SEC24AO95486 1093 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 BMP15O95972 392 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 KRT18P05783 430 aaKnown RBP18.18■□□□□ 0.5
USP40-212ENST00000473191 HNRNPA1P09651 372 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP40-212ENST00000473191 DDIT3P35638 169 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 LIG4P49917 911 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 HTR4Q13639 388 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 SLC8B1Q6J4K2 584 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 PDXDC1Q6P996 788 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 SIX5Q8N196 739 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 FGF13Q92913 245 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 KIF12Q96FN5 646 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 SUSD3Q96L08 255 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 FBXL5Q9UKA1 691 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 NUB1Q9Y5A7 615 aa18.18■□□□□ 0.5
USP40-212ENST00000473191 TIMM13Q9Y5L4 95 aaPredicted RBP18.18■□□□□ 0.5
USP40-212ENST00000473191 ZDBF2Q9HCK1 2354 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 HNRNPDLO14979 420 aaKnown RBP18.17■□□□□ 0.5
USP40-212ENST00000473191 ABLIM3O94929 683 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 PIGRP01833 764 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 HOXA9P31269 272 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 RPL9P32969 192 aaKnown RBP18.17■□□□□ 0.5
USP40-212ENST00000473191 MCM4P33991 863 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 PTPN5P54829 565 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 KCNA1Q09470 495 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 SLC5A9Q2M3M2 681 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 ASTLQ6HA08 431 aaPredicted RBP18.17■□□□□ 0.5
USP40-212ENST00000473191 SFR1Q86XK3 245 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 ING5Q8WYH8 240 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 DDX12PQ92771 950 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 PANK2Q9BZ23 570 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 MFSD1Q9H3U5 465 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.17■□□□□ 0.5
USP40-212ENST00000473191 CA14Q9ULX7 337 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 SRPRBQ9Y5M8 271 aaKnown RBP18.17■□□□□ 0.5
USP40-212ENST00000473191 MYO15AQ9UKN7 3530 aa18.17■□□□□ 0.5
USP40-212ENST00000473191 A0A0B4J269 797 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 MYMKA6NI61 221 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 SYN3O14994 580 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 CLTAP09496 248 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 GTF2BQ00403 316 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 MAP4K3Q8IVH8 894 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 ZNF461Q8TAF7 563 aa18.16■□□□□ 0.5
USP40-212ENST00000473191 GPR152Q8TDT2 470 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms