RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 MRPS5P82675 430 aaKnown RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 MYBPC3Q14896 1274 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 ZNF568Q3ZCX4 644 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 SPDYAQ5MJ70 313 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 TRIM68Q6AZZ1 485 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 CXXC5Q7LFL8 322 aaKnown RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 LURAP1LQ8IV03 231 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 WDR66Q8TBY9 1149 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 SH3RF3Q8TEJ3 882 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 OR14A2Q96R54 314 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 ELF4Q99607 663 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 FOXB1Q99853 325 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 DEF6Q9H4E7 631 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 PCIF1Q9H4Z3 704 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 C14orf93Q9H972 538 aaKnown RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 DDX56Q9NY93 547 aaKnown RBP5.3□□□□□ -1.56
VPS13A-210ENST00000471439 FBXO10Q9UK96 956 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 FAM184BQ9ULE4 1060 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 COL4A5P29400 1685 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 REV3LO60673 3130 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 MYO15AQ9UKN7 3530 aa5.3□□□□□ -1.56
VPS13A-210ENST00000471439 ADGRB1O14514 1584 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 RGPD2P0DJD1 1756 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 MYO9BQ13459 2157 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ZNF623O75123 536 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 RAB11FIP3O75154 756 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 SERPINB2P05120 415 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 APEX1P27695 318 aaKnown RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 IARSP41252 1262 aaKnown RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 SELENOPP49908 381 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 KPNA1P52294 538 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ADAM15Q13444 863 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 SART3Q15020 963 aaKnown RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ARHGAP44Q17R89 818 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ATP13A4Q4VNC1 1196 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 BRDTQ58F21 947 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ZMAT1Q5H9K5 638 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 USP30Q70CQ3 517 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 RTKN2Q8IZC4 609 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 OR5AN1Q8NGI8 311 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 WDR48Q8TAF3 677 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ERO1AQ96HE7 468 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 C16orf92Q96LL3 132 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 CDK19Q9BWU1 502 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 PLA2G12BQ9BX93 195 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 TTYH1Q9H313 450 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 C12orf65Q9H3J6 166 aaKnown RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 GPRC5DQ9NZD1 345 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 THEGQ9P2T0 379 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 ASAP1Q9ULH1 1129 aa5.29□□□□□ -1.56
VPS13A-210ENST00000471439 APOBEC2Q9Y235 224 aaKnown RBP5.29□□□□□ -1.56
VPS13A-210ENST00000471439 FAM208AQ9UK61 1670 aaKnown RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 UBA6A0AVT1 1052 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 MED19A0JLT2 244 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 BRINP1O60477 761 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 PRKD3O94806 890 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 CR2P20023 1033 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 FNTBP49356 437 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 GUCY2FP51841 1108 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 HGFACQ04756 655 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 MTMR1Q13613 665 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 NFYCQ13952 458 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 PRAMEF9Q5VWM5 478 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 SLFN12LQ6IEE8 588 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 OLFM4Q6UX06 510 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 HDGFL2Q7Z4V5 671 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 SPATS2Q86XZ4 545 aaKnown RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 GPR135Q8IZ08 494 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 EFHBQ8N7U6 833 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 CLRN3Q8NCR9 226 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 CALML6Q8TD86 181 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 RTF1Q92541 710 aaKnown RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 SCYL1Q96KG9 808 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 CCDC8Q9H0W5 538 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-210ENST00000471439 OR10A2Q9H208 303 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 SEMA4AQ9H3S1 761 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 ZMAT4Q9H898 229 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 TOMM22Q9NS69 142 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 HOMER2Q9NSB8 354 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 TSC22D4Q9Y3Q8 395 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 WDR87Q6ZQQ6 2873 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 FAM186AA6NE01 2351 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 ZFYVE26Q68DK2 2539 aa5.28□□□□□ -1.56
VPS13A-210ENST00000471439 DMDP11532 3685 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 C1QTNF3-AMACRE9PGA6 284 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 ZEB2O60315 1214 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 PDGFRBP09619 1106 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 MEOX1P50221 254 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 TJP1Q07157 1748 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 PLEKHG6Q3KR16 790 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 CCDC93Q567U6 631 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 UNQ6494/PRO21346Q6UXR6 183 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 CMIPQ8IY22 773 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 PPM1EQ8WY54 764 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 JDP2Q8WYK2 163 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 MAML3Q96JK9 1138 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 POFUT1Q9H488 388 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 AGO3Q9H9G7 860 aaKnown RBP5.27□□□□□ -1.57
VPS13A-210ENST00000471439 SLC5A4Q9NY91 659 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 MYRFQ9Y2G1 1151 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms