RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MICAL1Q8TDZ2 1067 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 MFSD14AQ96MC6 490 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 TLR9Q9NR96 1032 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 FRMD4BQ9Y2L6 1034 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 CDH23Q9H251 3354 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 FSCN2O14926 492 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CETN3O15182 167 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CSPG5O95196 566 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 KIF4AO95239 1232 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 EFEMP2O95967 443 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 SOD2P04179 222 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CASP4P49662 377 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 TFAMQ00059 246 aaKnown RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 FKBP3Q00688 224 aaKnown RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 LRRC63Q05C16 580 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 BMS1Q14692 1282 aaKnown RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 PSMD6Q15008 389 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CCDC183Q5T5S1 534 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 FUT10Q6P4F1 479 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CD300LGQ6UXG3 332 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 TMC7Q7Z402 723 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 RNF168Q8IYW5 571 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 TMEM130Q8N3G9 435 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 MLKLQ8NB16 471 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 C3orf58Q8NDZ4 430 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CACTINQ8WUQ7 758 aaKnown RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 NELFBQ8WX92 580 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 CCDC127Q96BQ5 260 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 FNBP1Q96RU3 617 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 VN1R3Q9BXE9 311 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 GPR62Q9BZJ7 368 aa12.94□□□□□ -0.34
VPS13D-204ENST00000469054 NGRNQ9NPE2 291 aaKnown RBP12.94□□□□□ -0.34
VPS13D-204ENST00000469054 SF3B1O75533 1304 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 BICDL2A1A5D9 508 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 TRIM49BA6NDI0 452 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 MAPK13O15264 365 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 AKAP3O75969 853 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 DLATP10515 647 aaKnown RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 CTSAP10619 480 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 IGFBP6P24592 240 aaPredicted RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 IRS1P35568 1242 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 PSMC2P35998 433 aaKnown RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 NLRP12P59046 1061 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 ELAVL2Q12926 359 aaKnown RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 PAK1Q13153 545 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 TIGD5Q53EQ6 642 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 C9orf57Q5W0N0 161 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 PDE12Q6L8Q7 609 aaKnown RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 FOXR2Q6PJQ5 311 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 TAS1R1Q7RTX1 841 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 WDR49Q8IV35 697 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 ZC3H3Q8IXZ2 948 aaKnown RBP12.93□□□□□ -0.34
VPS13D-204ENST00000469054 PARD3BQ8TEW8 1205 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 HASPINQ8TF76 798 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 TCF25Q9BQ70 676 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 HERC2P3Q9BVR0 1158 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 ZBP1Q9H171 429 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 ENTPD7Q9NQZ7 604 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 INTS13Q9NVM9 706 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 DPP3Q9NY33 737 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 TMEM63CQ9P1W3 806 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 CTNND2Q9UQB3 1225 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 STXBP5LQ9Y2K9 1186 aa12.93□□□□□ -0.34
VPS13D-204ENST00000469054 ANO9A1A5B4 782 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 PIRO00625 290 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 TRAPPC3O43617 180 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 CXCL14O95715 111 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 TMEM191BP0C7N4 346 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 TNNI1P19237 187 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 BRCC3P46736 316 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 STX17P56962 302 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 SMC1AQ14683 1233 aaKnown RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 DUOXA2Q1HG44 320 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 KLHL40Q2TBA0 621 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 FAM171A1Q5VUB5 890 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 PLPP4Q5VZY2 271 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 LMBRD2Q68DH5 695 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 TTI2Q6NXR4 508 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 FAM186BQ8IYM0 893 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 MRPL43Q8N983 215 aaKnown RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 OR5B17Q8NGF7 314 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 PLEKHO2Q8TD55 490 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 TMC2Q8TDI7 906 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 SYAP1Q96A49 352 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 EEF2KMTQ96G04 330 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 ANKRD36BP1Q96IX9 119 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 POP1Q99575 1024 aaKnown RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 CGRRF1Q99675 332 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 MKNK1Q9BUB5 465 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 MTMR12Q9C0I1 747 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 GZF1Q9H116 711 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 NSUN3Q9H649 340 aaKnown RBP12.92□□□□□ -0.34
VPS13D-204ENST00000469054 CHST7Q9NS84 486 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 NUB1Q9Y5A7 615 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 PCDHGC5Q9Y5F6 944 aa12.92□□□□□ -0.34
VPS13D-204ENST00000469054 PTPRJQ12913 1337 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 TNNC2P02585 160 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 URODP06132 367 aa12.91□□□□□ -0.34
VPS13D-204ENST00000469054 EPB41P11171 864 aaKnown RBP12.91□□□□□ -0.34
VPS13D-204ENST00000469054 PAX3P23760 479 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms