RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 NUB1Q9Y5A7 615 aa20.81■□□□□ 0.92
COL7A1-207ENST00000467985 PDCD11Q14690 1871 aaKnown RBP20.8■□□□□ 0.92
COL7A1-207ENST00000467985 SYN3O14994 580 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 OGTO15294 1046 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 CXCL8P10145 99 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 GBP2P32456 591 aaPredicted RBP20.8■□□□□ 0.92
COL7A1-207ENST00000467985 BRCC3P46736 316 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 GTF2BQ00403 316 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 SEZ6Q53EL9 994 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 PPM1LQ5SGD2 360 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 SV2BQ7L1I2 683 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 PRRX2Q99811 253 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 ST6GALNAC4Q9H4F1 302 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 EPS15L1Q9UBC2 864 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 CDY1Q9Y6F8 540 aa20.8■□□□□ 0.92
COL7A1-207ENST00000467985 A0A0B4J269 797 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 TTC26A0AVF1 554 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 I3L4J1 428 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 MEFVO15553 781 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-207ENST00000467985 ADAM12O43184 909 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 XPOTO43592 962 aaKnown RBP20.79■□□□□ 0.92
COL7A1-207ENST00000467985 XYLBO75191 536 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 C8AP07357 584 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 POU2F2P09086 479 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 IGFBP6P24592 240 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-207ENST00000467985 PPP2R3AQ06190 1150 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 TDGQ13569 410 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 CCDC73Q6ZRK6 1079 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 MAP4K3Q8IVH8 894 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 NXPE3Q969Y0 559 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 CLIC6Q96NY7 704 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 USP28Q96RU2 1077 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 FIZ1Q96SL8 496 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 HAPLN2Q9GZV7 340 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 KCNK12Q9HB15 430 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 SEL1LQ9UBV2 794 aa20.79■□□□□ 0.92
COL7A1-207ENST00000467985 ZFP37Q9Y6Q3 630 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-207ENST00000467985 H7C4K7 107 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 GAP43P17677 238 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 CYP3A5P20815 502 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 NASPP49321 788 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-207ENST00000467985 VARS2Q5ST30 1063 aaKnown RBP20.78■□□□□ 0.92
COL7A1-207ENST00000467985 AXDND1Q5T1B0 1012 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-207ENST00000467985 SLC8B1Q6J4K2 584 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 HSCBQ8IWL3 235 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 CD302Q8IX05 232 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 DDX12PQ92771 950 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 HVCN1Q96D96 273 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 KIF12Q96FN5 646 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 SUSD3Q96L08 255 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 MSTO1Q9BUK6 570 aa20.78■□□□□ 0.92
COL7A1-207ENST00000467985 RPF1Q9H9Y2 349 aaKnown RBP20.78■□□□□ 0.92
COL7A1-207ENST00000467985 UBQLN1Q9UMX0 589 aaKnown RBP20.78■□□□□ 0.92
COL7A1-207ENST00000467985 FAM189A1O60320 539 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 N4BP1O75113 896 aaKnown RBP20.77■□□□□ 0.92
COL7A1-207ENST00000467985 NMT1P30419 496 aaKnown RBP20.77■□□□□ 0.92
COL7A1-207ENST00000467985 LRPAP1P30533 357 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 MCM4P33991 863 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 SLFN12LQ6IEE8 588 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 DYMQ7RTS9 669 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 APPL2Q8NEU8 664 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 SLC7A14Q8TBB6 771 aa20.77■□□□□ 0.92
COL7A1-207ENST00000467985 ZNF396Q96N95 335 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-207ENST00000467985 LACTBL1A8MY62 500 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 ADRB2P07550 413 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 HSP90AA1P07900 732 aaKnown RBP20.76■□□□□ 0.91
COL7A1-207ENST00000467985 FSHRP23945 695 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 TNFSF9P41273 254 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 STAT6P42226 847 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 STK38Q15208 465 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 ZBTB6Q15916 424 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 ENOX2Q16206 610 aaKnown RBP20.76■□□□□ 0.91
COL7A1-207ENST00000467985 RSPO2Q6UXX9 243 aaPredicted RBP20.76■□□□□ 0.91
COL7A1-207ENST00000467985 ZNF720Q7Z2F6 126 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 ZNF461Q8TAF7 563 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 MYADMQ96S97 322 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 TUBGCP4Q9UGJ1 667 aa20.76■□□□□ 0.91
COL7A1-207ENST00000467985 LAMP2P13473 410 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 PAX3P23760 479 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 ANP32AP39687 249 aaKnown RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 NUBP1P53384 320 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 MRPL58Q14197 206 aaKnown RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 ZC2HC1CQ53FD0 456 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 GET4Q7L5D6 327 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 GRASPQ7Z6J2 395 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 SFR1Q86XK3 245 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 LINC00301Q8NCQ3 95 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 MRPL44Q9H9J2 332 aaKnown RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 CPSF3Q9UKF6 684 aaKnown RBP20.75■□□□□ 0.91
COL7A1-207ENST00000467985 MAFFQ9ULX9 164 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 PCDHB8Q9UN66 801 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 DUSP12Q9UNI6 340 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 DERAQ9Y315 318 aa20.75■□□□□ 0.91
COL7A1-207ENST00000467985 MYMKA6NI61 221 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 SPTLC2O15270 562 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 CCL16O15467 120 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 TBC1D4O60343 1298 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 ABLIM3O94929 683 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 ELF1P32519 619 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 POU5F1Q01860 360 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms