RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CYP1A1P04798 512 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 NUDT17P0C025 328 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 FGFR4P22455 802 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 ICAM3P32942 547 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 NAMPTP43490 491 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 NSFP46459 744 aaKnown RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 DRP2Q13474 957 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 CUL2Q13617 745 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 SGO2Q562F6 1265 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 DENND2CQ68D51 928 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 DNERQ8NFT8 737 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 OR5B17Q8NGF7 314 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 CNKSR2Q8WXI2 1034 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 ATG4AQ8WYN0 398 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 PCYT2Q99447 389 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 LRRC19Q9H756 370 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 AVENQ9NQS1 362 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 CHST7Q9NS84 486 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 PCDHB4Q9Y5E5 795 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 GSTTP1A0A1W2PQM5 241 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ECEL1O95672 775 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 FAM107AO95990 144 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 UBA1P22314 1058 aaKnown RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 FNTAP49354 379 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ALDH5A1P51649 535 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 CENPCQ03188 943 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 PPP1R7Q15435 360 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 SLFN12LQ6IEE8 588 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 MON1BQ7L1V2 547 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 EEPD1Q7L9B9 569 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ZNF677Q86XU0 584 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 C12orf50Q8NA57 414 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 MDM1Q8TC05 714 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ART4Q93070 314 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 TLCD1Q96CP7 247 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 FAM81BQ96LP2 452 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 C11orf70Q9BRQ4 267 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 NIFKQ9BYG3 293 aaKnown RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 BTBD7Q9P203 1132 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 MTRF1LQ9UGC7 380 aaKnown RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 PARP2Q9UGN5 583 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 NUB1Q9Y5A7 615 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 PASKQ96RG2 1323 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 IGKV6D-21A0A0A0MT36 114 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 A0A0B4J269 797 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 TP73O15350 636 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 USP2O75604 605 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 FARP2O94887 1054 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 PIGRP01833 764 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 GNA15P30679 374 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ABCD1P33897 745 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 BPIFB4P59827 614 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 KRT17Q04695 432 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 CAPSQ13938 189 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 B4GALNT4Q76KP1 1039 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 CCDC25Q86WR0 208 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 CHST13Q8NET6 341 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-217ENST00000466159 R3HDMLQ9H3Y0 253 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 GPRC5DQ9NZD1 345 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 KCNG1Q9UIX4 513 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 LTBP3Q9NS15 1303 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 CNTNAP2Q9UHC6 1331 aa9.54□□□□□ -0.88
SYNE1-217ENST00000466159 ADGRA2Q96PE1 1338 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 GMNCA6NCL1 334 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TRAPPC3O43617 180 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 GJB6O95452 261 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 MYBL1P10243 752 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 GBP1P32455 592 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TNFSF9P41273 254 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 LIG3P49916 1009 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 NOMO3P69849 1222 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 NOP14P78316 857 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TRIP13Q15645 432 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 NOL9Q5SY16 702 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 LBX2Q6XYB7 198 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 HOOK3Q86VS8 718 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 ABRAQ8N0Z2 381 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 RAPGEF5Q92565 580 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 DDX27Q96GQ7 796 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 RUNDC3BQ96NL0 473 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 PLVAPQ9BX97 442 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 HEMGNQ9BXL5 484 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 ADAM22Q9P0K1 906 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SIP14410 1827 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 WDR90Q96KV7 1748 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 A0A087WUV0 522 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SOWAHBA6NEL2 793 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 RIPK2O43353 540 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 LDHAP00338 332 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 CST3P01034 146 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 CLTAP09496 248 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SLC1A1P43005 524 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 SLCO1A2P46721 670 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 STAT5BP51692 787 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 TAS2R40P59535 323 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 IFI35P80217 286 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 MAMLD1Q13495 774 aa9.53□□□□□ -0.88
SYNE1-217ENST00000466159 BYSLQ13895 437 aaKnown RBP9.53□□□□□ -0.88
SYNE1-217ENST00000466159 VGLL4Q14135 290 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms