RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C1RP00736 705 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 PDGFBP01127 241 aaPredicted RBP19.34■□□□□ 0.69
COL7A1-205ENST00000465238 UBE2HP62256 183 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 TCF15Q12870 199 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 ALCAMQ13740 583 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 USP41Q3LFD5 358 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 EEF1DP3Q658K8 133 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 FUT10Q6P4F1 479 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 ZPBP2Q6X784 338 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 CLEC17AQ6ZS10 378 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 STXBP4Q6ZWJ1 553 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 ENGASEQ8NFI3 743 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 FEZF2Q8TBJ5 459 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 HDAC7Q8WUI4 952 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 HVCN1Q96D96 273 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 RHOBTB2Q9BYZ6 727 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 IRF2BPLQ9H1B7 796 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.34■□□□□ 0.69
COL7A1-205ENST00000465238 ADAM28Q9UKQ2 775 aa19.34■□□□□ 0.69
COL7A1-205ENST00000465238 MTCL1Q9Y4B5 1905 aaKnown RBP19.33■□□□□ 0.69
COL7A1-205ENST00000465238 F8W810 466 aa19.33■□□□□ 0.68
COL7A1-205ENST00000465238 LIG4P49917 911 aa19.33■□□□□ 0.68
COL7A1-205ENST00000465238 SNW1Q13573 536 aaKnown RBP19.33■□□□□ 0.68
COL7A1-205ENST00000465238 DCAF4L1Q3SXM0 396 aa19.33■□□□□ 0.68
COL7A1-205ENST00000465238 CCDC47Q96A33 483 aaKnown RBP19.33■□□□□ 0.68
COL7A1-205ENST00000465238 KLK14Q9P0G3 267 aa19.33■□□□□ 0.68
COL7A1-205ENST00000465238 EXOC7Q9UPT5 735 aa19.33■□□□□ 0.68
COL7A1-205ENST00000465238 CCDC195A0A1B0GUA6 201 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 HNRNPDLO14979 420 aaKnown RBP19.32■□□□□ 0.68
COL7A1-205ENST00000465238 TOM1L1O75674 476 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 MATR3P43243 847 aaKnown RBP eCLIP19.32■□□□□ 0.68
COL7A1-205ENST00000465238 CREMQ03060 361 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 ZNF568Q3ZCX4 644 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 FAM26FQ5R3K3 315 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 MPZL3Q6UWV2 235 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 TIGD1Q96MW7 591 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 ACCSQ96QU6 501 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 GPR62Q9BZJ7 368 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 SMOC2Q9H3U7 446 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 PLEKHA4Q9H4M7 779 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 PTPRHQ9HD43 1115 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 FNIP2Q9P278 1114 aa19.32■□□□□ 0.68
COL7A1-205ENST00000465238 HOOK1Q9UJC3 728 aaKnown RBP19.32■□□□□ 0.68
COL7A1-205ENST00000465238 CLDN3O15551 220 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 KINO60870 393 aaKnown RBP19.31■□□□□ 0.68
COL7A1-205ENST00000465238 TADA2AO75478 443 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 MYBP10242 640 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 MCF2P10911 925 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 TUSC3Q13454 348 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 HSP90AA2PQ14568 343 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-205ENST00000465238 L1TD1Q5T7N2 865 aaKnown RBP19.31■□□□□ 0.68
COL7A1-205ENST00000465238 MAP4K3Q8IVH8 894 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 HPS3Q969F9 1004 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 STRA6Q9BX79 667 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 CDT1Q9H211 546 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 WDR6Q9NNW5 1121 aaKnown RBP19.31■□□□□ 0.68
COL7A1-205ENST00000465238 EXOC1Q9NV70 894 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 ANKFY1Q9P2R3 1169 aa19.31■□□□□ 0.68
COL7A1-205ENST00000465238 SF3B1O75533 1304 aaKnown RBP eCLIP19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PPP1R37O75864 691 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PAPLNO95428 1278 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PIGRP01833 764 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 RPN1P04843 607 aaKnown RBP19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PRR29P0C7W0 189 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 HARSP12081 509 aaKnown RBP19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PROZP22891 400 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 CASP5P51878 434 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PSMD2Q13200 908 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 TDGQ13569 410 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 POSTNQ15063 836 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 KMT5BQ4FZB7 885 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 PALB2Q86YC2 1186 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 SYCP3Q8IZU3 236 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 RIN2Q8WYP3 895 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-205ENST00000465238 ZBTB45Q96K62 511 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-205ENST00000465238 B3GALT6Q96L58 329 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 TMEM206Q9H813 350 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 IGSF9Q9P2J2 1179 aa19.3■□□□□ 0.68
COL7A1-205ENST00000465238 GOLGA6L22H0YM25 854 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 TGM5O43548 720 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 KLRC4O43908 158 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 RFPL2O75678 378 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 PRPF6O94906 941 aaKnown RBP19.29■□□□□ 0.68
COL7A1-205ENST00000465238 THP07101 528 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 EHHADHQ08426 723 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 DPYDQ12882 1025 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 NOLC1Q14978 699 aaKnown RBP eCLIP19.29■□□□□ 0.68
COL7A1-205ENST00000465238 SMG7Q92540 1137 aaKnown RBP19.29■□□□□ 0.68
COL7A1-205ENST00000465238 RABGGTAQ92696 567 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 PHOX2BQ99453 314 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 CCDC94Q9BW85 323 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-205ENST00000465238 FGFBP2Q9BYJ0 223 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 MFSD1Q9H3U5 465 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 KCNK12Q9HB15 430 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 SLC39A2Q9NP94 309 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 ZDHHC7Q9NXF8 308 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 SNTG2Q9NY99 539 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 GDAQ9Y2T3 454 aa19.29■□□□□ 0.68
COL7A1-205ENST00000465238 CLUHO75153 1309 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 PTGESO14684 152 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms