RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ACAP3Q96P50 834 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 TCHPQ9BT92 498 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 CNTN3Q9P232 1028 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 MRPS23Q9Y3D9 190 aaKnown RBP17.63■□□□□ 0.41
COL7A1-204ENST00000462475 RBM19Q9Y4C8 960 aaKnown RBP17.63■□□□□ 0.41
COL7A1-204ENST00000462475 MYH15Q9Y2K3 1946 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 FRYLO94915 3013 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 ZNF292O60281 2723 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 TBC1D4O60343 1298 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 RHOP08100 348 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 CEBPBP17676 345 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 GUCY2CP25092 1073 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 ARPP19P56211 112 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 MLF2Q15773 248 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-204ENST00000462475 SEZ6Q53EL9 994 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 RTL10Q7L3V2 364 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 C1orf210Q8IVY1 113 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 SHDQ96IW2 340 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 PNMA5Q96PV4 448 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 DDX23Q9BUQ8 820 aaKnown RBP17.62■□□□□ 0.41
COL7A1-204ENST00000462475 C17orf75Q9HAS0 396 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 ANKFY1Q9P2R3 1169 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 NOTCH4Q99466 2003 aa17.62■□□□□ 0.41
COL7A1-204ENST00000462475 ARHGEF37A1IGU5 675 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 SYN3O14994 580 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 ABLIM3O94929 683 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 SP9P0CG40 484 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 C8orf34Q49A92 452 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 SLC44A4Q53GD3 710 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 TMEM130Q8N3G9 435 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 TMEM161BQ8NDZ6 487 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 ZNF461Q8TAF7 563 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 KCNG4Q8TDN1 519 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 SPIRE2Q8WWL2 714 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 MCRS1Q96EZ8 462 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 MTF2Q9Y483 593 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-204ENST00000462475 NUB1Q9Y5A7 615 aa17.61■□□□□ 0.41
COL7A1-204ENST00000462475 TRIP11Q15643 1979 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 EP300Q09472 2414 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 KANSL1LA0AUZ9 987 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 PRRG1O14668 218 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 TOM1L1O75674 476 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 SEC24AO95486 1093 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 LMNAP02545 664 aaKnown RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 LRG1P02750 347 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 PLS3P13797 630 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 ELF1P32519 619 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 RPL9P32969 192 aaKnown RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 ATP2C1P98194 919 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 PRKCQQ04759 706 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 STRN3Q13033 797 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 MRPL58Q14197 206 aaKnown RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 NOLC1Q14978 699 aaKnown RBP eCLIP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 SLC10A6Q3KNW5 377 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 HYIQ5T013 277 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 MCTP1Q6DN14 999 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 MAML2Q8IZL2 1156 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 SUSD3Q96L08 255 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 PLIN2Q99541 437 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 NTPCRQ9BSD7 190 aaKnown RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 TIPINQ9BVW5 301 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 PLA2G2FQ9BZM2 168 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 CYP4F11Q9HBI6 524 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 AVENQ9NQS1 362 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-204ENST00000462475 GDE1Q9NZC3 331 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 TUBGCP4Q9UGJ1 667 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 FBXL5Q9UKA1 691 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 DMXL1Q9Y485 3027 aa17.6■□□□□ 0.41
COL7A1-204ENST00000462475 H7C4K7 107 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 NRG2O14511 850 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-204ENST00000462475 ECI2O75521 394 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 MAPTP10636 758 aaKnown RBP17.59■□□□□ 0.41
COL7A1-204ENST00000462475 ATF2P15336 505 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 CD72P21854 359 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 SLC12A3P55017 1021 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 PFKPQ01813 784 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 CACNB1Q02641 598 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-204ENST00000462475 UBXN2BQ14CS0 331 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 RILPL1Q5EBL4 403 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 PRSS36Q5K4E3 855 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 TCEAL8Q8IYN2 117 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 SYT2Q8N9I0 419 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-204ENST00000462475 TCEAL4Q96EI5 215 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 CORO1BQ9BR76 489 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 SEMA4AQ9H3S1 761 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 INSL5Q9Y5Q6 135 aa17.59■□□□□ 0.41
COL7A1-204ENST00000462475 DNAH14Q0VDD8 3507 aa17.58■□□□□ 0.41
COL7A1-204ENST00000462475 NPHP3-ACAD11A0A0J9YXS1 232 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 VWA3AA6NCI4 1184 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 CXCL8P10145 99 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 PTPN2P17706 415 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 FCARP24071 287 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 MCM4P33991 863 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 CCR2P41597 374 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 CTXN3Q4LDR2 81 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 TANGO2Q6ICL3 276 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 ZNF280DQ6N043 979 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 TBC1D32Q96NH3 1257 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 HAPLN2Q9GZV7 340 aa17.58■□□□□ 0.4
COL7A1-204ENST00000462475 LTB4R2Q9NPC1 389 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms