RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SEZ6Q53EL9 994 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 SLC7A14Q8TBB6 771 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 C18orf25Q96B23 403 aaPredicted RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 KCNK12Q9HB15 430 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.22■□□□□ 0.03
USP4-206ENST00000461553 EPS15L1Q9UBC2 864 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 STK17AQ9UEE5 414 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 TBX20Q9UMR3 447 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 BACE2Q9Y5Z0 518 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 MIA3Q5JRA6 1907 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 CCL16O15467 120 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 XPOTO43592 962 aaKnown RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 PIGRP01833 764 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 CLTAP09496 248 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 HOXD11P31277 338 aaPredicted RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 PTPN5P54829 565 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 PTPAQ15257 358 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 SLC10A6Q3KNW5 377 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 SPECC1Q5M775 1068 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 VARS2Q5ST30 1063 aaKnown RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 AXDND1Q5T1B0 1012 aaPredicted RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 CD300LGQ6UXG3 332 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 KRI1Q8N9T8 703 aaKnown RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 PRSS33Q8NF86 280 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 MYADMQ96S97 322 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 PLEKHA5Q9HAU0 1116 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 FOXD4L1Q9NU39 408 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 TUBGCP4Q9UGJ1 667 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 FBXO2Q9UK22 296 aaPredicted RBP15.21■□□□□ 0.03
USP4-206ENST00000461553 FBXL21Q9UKT6 434 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 POLIQ9UNA4 740 aa15.21■□□□□ 0.03
USP4-206ENST00000461553 SCN1AP35498 2009 aa15.21■□□□□ 0.02
USP4-206ENST00000461553 MEFVO15553 781 aaPredicted RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 POU2F2P09086 479 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 FSHRP23945 695 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 IGFBP6P24592 240 aaPredicted RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 ROR1Q01973 937 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 CEBPZQ03701 1054 aaKnown RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 ZNF280DQ6N043 979 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 GRASPQ7Z6J2 395 aaPredicted RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 MAP4K3Q8IVH8 894 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 KIF12Q96FN5 646 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 EPSTI1Q96J88 318 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 HAPLN2Q9GZV7 340 aa15.2■□□□□ 0.02
USP4-206ENST00000461553 UBQLN1Q9UMX0 589 aaKnown RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 SRPRBQ9Y5M8 271 aaKnown RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 ZFP37Q9Y6Q3 630 aaPredicted RBP15.2■□□□□ 0.02
USP4-206ENST00000461553 H7C4K7 107 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 OGTO15294 1046 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 STX6O43752 255 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 AVPR2P30518 371 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 TNFSF9P41273 254 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 UVSSAQ2YD98 709 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 IER5LQ5T953 404 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 SLC8B1Q6J4K2 584 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 FAM173BQ6P4H8 233 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 RTL10Q7L3V2 364 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 NXPE3Q969Y0 559 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 SUSD3Q96L08 255 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 MSTO1Q9BUK6 570 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 ZSCAN16Q9H4T2 348 aaPredicted RBP15.19■□□□□ 0.02
USP4-206ENST00000461553 RPF1Q9H9Y2 349 aaKnown RBP15.19■□□□□ 0.02
USP4-206ENST00000461553 MTMR6Q9Y217 621 aa15.19■□□□□ 0.02
USP4-206ENST00000461553 TTC26A0AVF1 554 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 LRG1P02750 347 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 LAMP2P13473 410 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 NMT1P30419 496 aaKnown RBP15.18■□□□□ 0.02
USP4-206ENST00000461553 ELF1P32519 619 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 DDIT3P35638 169 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 NUBP1P53384 320 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 GTF2BQ00403 316 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 SPAG1Q07617 926 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 CTXN3Q4LDR2 81 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 RRAGBQ5VZM2 374 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 RSPO2Q6UXX9 243 aaPredicted RBP15.18■□□□□ 0.02
USP4-206ENST00000461553 CCDC73Q6ZRK6 1079 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 USP49Q70CQ1 688 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 DYMQ7RTS9 669 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 SFR1Q86XK3 245 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 APPL2Q8NEU8 664 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 RSAD2Q8WXG1 361 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 CLIC6Q96NY7 704 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 USP28Q96RU2 1077 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 FIZ1Q96SL8 496 aa15.18■□□□□ 0.02
USP4-206ENST00000461553 MORC2Q9Y6X9 1032 aaPredicted RBP15.18■□□□□ 0.02
USP4-206ENST00000461553 WDR27A2RRH5 827 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 PRRG1O14668 218 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 NARSO43776 548 aaKnown RBP15.17■□□□□ 0.02
USP4-206ENST00000461553 SRFP11831 508 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 CYP3A5P20815 502 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 RFX1P22670 979 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 LRPAP1P30533 357 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 STAT6P42226 847 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 ARPP19P56211 112 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 NTHL1P78549 312 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 HTR4Q13639 388 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 ENOX2Q16206 610 aaKnown RBP15.17■□□□□ 0.02
USP4-206ENST00000461553 PABPC1LQ4VXU2 614 aaKnown RBP15.17■□□□□ 0.02
USP4-206ENST00000461553 ZBTB41Q5SVQ8 909 aa15.17■□□□□ 0.02
USP4-206ENST00000461553 ASTLQ6HA08 431 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms