RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 RAD9AQ99638 391 aa11□□□□□ -0.65
UPF2-204ENST00000460569 TUBGCP2Q9BSJ2 902 aa11□□□□□ -0.65
UPF2-204ENST00000460569 RBSNQ9H1K0 784 aa11□□□□□ -0.65
UPF2-204ENST00000460569 DPP3Q9NY33 737 aa11□□□□□ -0.65
UPF2-204ENST00000460569 CACNG4Q9UBN1 327 aa11□□□□□ -0.65
UPF2-204ENST00000460569 GTF3C5Q9Y5Q8 519 aaPredicted RBP11□□□□□ -0.65
UPF2-204ENST00000460569 LCHNA4D1U4 455 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 DDHD2O94830 711 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 CLSTN1O94985 981 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 AFPP02771 609 aaKnown RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 ITGB3P05106 788 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 KRT19P08727 400 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 CYP3A5P20815 502 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 POLR2BP30876 1174 aaKnown RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 GTF2H1P32780 548 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 PIK3CAP42336 1068 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 OR1G1P47890 313 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 MXI1P50539 228 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 AP3M2P53677 418 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 CLDN10P78369 228 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 MYL7Q01449 175 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 PPP3CAQ08209 521 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 DSC1Q08554 894 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 KCNH2Q12809 1159 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 ZBTB6Q15916 424 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 FIBCD1Q8N539 461 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 C1orf127Q8N9H9 656 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 SP7Q8TDD2 431 aaPredicted RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 ZNF516Q92618 1163 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 PRO3102Q9H379 93 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 NRDE2Q9H7Z3 1164 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 TMEM8AQ9HCN3 771 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 DNAJB4Q9UDY4 337 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 LIMA1Q9UHB6 759 aaKnown RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 ITGA11Q9UKX5 1188 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 R3HCC1Q9Y3T6 440 aaKnown RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 MRPL42Q9Y6G3 142 aaKnown RBP10.99□□□□□ -0.65
UPF2-204ENST00000460569 SCN1AP35498 2009 aa10.99□□□□□ -0.65
UPF2-204ENST00000460569 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 PODXLO00592 558 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 N4BP1O75113 896 aaKnown RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 SERPINC1P01008 464 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 MYOGP15173 224 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 LAG3P18627 525 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 PBX3P40426 434 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 FMO5P49326 533 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 CLCNKBP51801 687 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 COPB1P53618 953 aaKnown RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 TRPC3Q13507 836 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 RAB30Q15771 203 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 ZACNQ401N2 412 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 CBWD6Q4V339 395 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 VWA3BQ502W6 1294 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 CBWD3Q5JTY5 395 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 MIIPQ5JXC2 388 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 CBWD5Q5RIA9 395 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 PRPF38BQ5VTL8 546 aaKnown RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 TDRD10Q5VZ19 366 aaKnown RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 C9orf57Q5W0N0 161 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 KRT39Q6A163 491 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 SV2AQ7L0J3 742 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 TRAPPC11Q7Z392 1133 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 COLGALT2Q8IYK4 626 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 RABGGTAQ92696 567 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 UROC1Q96N76 676 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 ZNF558Q96NG5 402 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 PAAF1Q9BRP4 392 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 VPS16Q9H269 839 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 NDST4Q9H3R1 872 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 CWH43Q9H720 699 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 SIX4Q9UIU6 781 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 AGAP1Q9UPQ3 857 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 PRG3Q9Y2Y8 225 aaPredicted RBP10.98□□□□□ -0.65
UPF2-204ENST00000460569 PCDHA11Q9Y5I1 949 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 TSC2P49815 1807 aa10.98□□□□□ -0.65
UPF2-204ENST00000460569 LINC01553A4QN01 128 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 PPEF2O14830 753 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 HLA-DRAP01903 254 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 C4BPAP04003 597 aaKnown RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 CA3P07451 260 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 LRPAP1P30533 357 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 RPL9P32969 192 aaKnown RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 PBX2P40425 430 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 SLC11A1P49279 550 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 BCAR1P56945 870 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 MCCD1P59942 119 aaPredicted RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 RBP5P82980 135 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 CETN1Q12798 172 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 FILIP1LQ4L180 1135 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 C15orf39Q6ZRI6 1047 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 COLGALT1Q8NBJ5 622 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 FBXL13Q8NEE6 735 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 HASPINQ8TF76 798 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 DDX27Q96GQ7 796 aaKnown RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 ZNF560Q96MR9 790 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 TMEM175Q9BSA9 504 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 PBX4Q9BYU1 374 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 AAASQ9NRG9 546 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 MSRAQ9UJ68 235 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms