RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	COLEC11	Q9BWP8	271 aa		11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	ASB7	Q9H672	318 aa		11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	RBAK	Q9NYW8	714 aa	Predicted RBP	11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	UBQLN1	Q9UMX0	589 aa	Known RBP	11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	TRAF3IP3	Q9Y228	551 aa		11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	PDCD11	Q14690	1871 aa	Known RBP	11.14	□□□□□ -0.63
MRPL55-223	ENST00000459783	ANO9	A1A5B4	782 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	TRIM49B	A6NDI0	452 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	PPP1R3G	B7ZBB8	358 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	KIAA0391	O15091	583 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	B3GAT3	O94766	335 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SMC2	O95347	1197 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	LDHA	P00338	332 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	NR3C1	P04150	777 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CYP3A5	P20815	502 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	LTBR	P36941	435 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	NRIP1	P48552	1158 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SNRPF	P62306	86 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	DSG1	Q02413	1049 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	DLX2	Q07687	328 aa	Predicted RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CYP24A1	Q07973	514 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	TMEM132D	Q14C87	1099 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SNRNP35	Q16560	246 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CTC1	Q2NKJ3	1217 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	C1orf220	Q5T0J3	134 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	DCLRE1A	Q6PJP8	1040 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	HS2ST1	Q7LGA3	356 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	TMC7	Q7Z402	723 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	RBM23	Q86U06	439 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SLC9A9	Q8IVB4	645 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CD302	Q8IX05	232 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	XXYLT1	Q8NBI6	393 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CCDC47	Q96A33	483 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	EEF2KMT	Q96G04	330 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	UROC1	Q96N76	676 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	GBP4	Q96PP9	640 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	MED15	Q96RN5	788 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	POP1	Q99575	1024 aa	Known RBP	11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	ENTPD7	Q9NQZ7	604 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SLC38A7	Q9NVC3	462 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	SIX4	Q9UIU6	781 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	DERA	Q9Y315	318 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	C2CD2	Q9Y426	696 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	IRAK3	Q9Y616	596 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	CIT	O14578	2027 aa		11.13	□□□□□ -0.63
MRPL55-223	ENST00000459783	ZNF233	A6NK53	670 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	PIR	O00625	290 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	ADAM12	O43184	909 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	CLASP2	O75122	1294 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	TBX10	O75333	385 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	TADA2A	O75478	443 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	IL18RAP	O95256	599 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	CXCL14	O95715	111 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	CNP	P09543	421 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	RPL17	P18621	184 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	FGFR3	P22607	806 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	TKT	P29401	623 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	RPL9	P32969	192 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	AARS	P49588	968 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	TFF2	Q03403	129 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	SMC1A	Q14683	1233 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	PSMD6	Q15008	389 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	NFIL3	Q16649	462 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	DUSP6	Q16828	381 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	FAM171A1	Q5VUB5	890 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	C9orf57	Q5W0N0	161 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	CENPP	Q6IPU0	288 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	C1orf127	Q8N9H9	656 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	MICAL1	Q8TDZ2	1067 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	ZNF516	Q92618	1163 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	DDX27	Q96GQ7	796 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	BORCS6	Q96GS4	357 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	MFSD14A	Q96MC6	490 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	KLHL5	Q96PQ7	755 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	MTMR12	Q9C0I1	747 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	IGFLR1	Q9H665	355 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	RXFP1	Q9HBX9	757 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	NGRN	Q9NPE2	291 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	RMND1	Q9NWS8	449 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	KIAA1468	Q9P260	1216 aa		11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	CGN	Q9P2M7	1197 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	PUF60	Q9UHX1	559 aa	Known RBP	11.12	□□□□□ -0.63
MRPL55-223	ENST00000459783	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	CARNS1	A5YM72	827 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	C2CD2L	O14523	706 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	EXOC3	O60645	756 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	AKAP3	O75969	853 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	GLUD2	P49448	558 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	DLG4	P78352	724 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	TFAM	Q00059	246 aa	Known RBP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	ADAM15	Q13444	863 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	ANKRD40	Q6AI12	368 aa		11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	PDE12	Q6L8Q7	609 aa	Known RBP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.11	□□□□□ -0.63
MRPL55-223	ENST00000459783	BEST2	Q8NFU1	509 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms