RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MTRRQ9UBK8 725 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 NUB1Q9Y5A7 615 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.13■■□□□ 1.29
HMGB3-205ENST00000455596 A0A087X0B3 334 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 A0A0B4J269 797 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 FAM189A1O60320 539 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 ZMYND10O75800 440 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 F13A1P00488 732 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 GAP43P17677 238 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 SIGLEC14Q08ET2 396 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 SLC39A4Q6P5W5 647 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 ZNF720Q7Z2F6 126 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 PDILTQ8N807 584 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 HVCN1Q96D96 273 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 DNAJC19Q96DA6 116 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 KIF12Q96FN5 646 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 DOCK6Q96HP0 2047 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 MSTO1Q9BUK6 570 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 RPF1Q9H9Y2 349 aaKnown RBP23.12■■□□□ 1.29
HMGB3-205ENST00000455596 WDR6Q9NNW5 1121 aaKnown RBP23.12■■□□□ 1.29
HMGB3-205ENST00000455596 SORCS3Q9UPU3 1222 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 TCHHQ07283 1943 aa23.12■■□□□ 1.29
HMGB3-205ENST00000455596 CLUHO75153 1309 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 ADAM12O43184 909 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 OR1D2P34982 312 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 SPAG1Q07617 926 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 RAB33AQ14088 237 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 LIN9Q5TKA1 542 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 SLFN12LQ6IEE8 588 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 HFE2Q6ZVN8 426 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 SPRYD3Q8NCJ5 442 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 STAMQ92783 540 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 ZNF707Q96C28 371 aaPredicted RBP23.11■■□□□ 1.29
HMGB3-205ENST00000455596 TSPAN18Q96SJ8 248 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 PRKD2Q9BZL6 878 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 MRPL44Q9H9J2 332 aaKnown RBP23.11■■□□□ 1.29
HMGB3-205ENST00000455596 TUBGCP4Q9UGJ1 667 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 LIMD1Q9UGP4 676 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 UBQLN1Q9UMX0 589 aaKnown RBP23.11■■□□□ 1.29
HMGB3-205ENST00000455596 BACE2Q9Y5Z0 518 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 CDY1Q9Y6F8 540 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 DOCK8Q8NF50 2099 aa23.11■■□□□ 1.29
HMGB3-205ENST00000455596 TMEM221A6NGB7 291 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 LACTBL1A8MY62 500 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 ANKRD63C9JTQ0 380 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 M0R296 226 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 SYN3O14994 580 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 XPOTO43592 962 aaKnown RBP23.1■■□□□ 1.29
HMGB3-205ENST00000455596 CUTAO60888 179 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 IDEP14735 1019 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 MCM4P33991 863 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 MTMR3Q13615 1198 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 ENOX2Q16206 610 aaKnown RBP23.1■■□□□ 1.29
HMGB3-205ENST00000455596 ZBTB41Q5SVQ8 909 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 CD302Q8IX05 232 aa23.1■■□□□ 1.29
HMGB3-205ENST00000455596 CPSF3Q9UKF6 684 aaKnown RBP23.1■■□□□ 1.29
HMGB3-205ENST00000455596 PPP1R37O75864 691 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 C8AP07357 584 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 CYP3A5P20815 502 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 LRPAP1P30533 357 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 ZBTB6Q15916 424 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 FOXD4L6Q3SYB3 417 aaPredicted RBP23.09■■□□□ 1.29
HMGB3-205ENST00000455596 PPM1LQ5SGD2 360 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 VARS2Q5ST30 1063 aaKnown RBP23.09■■□□□ 1.29
HMGB3-205ENST00000455596 FOXD4L3Q6VB84 417 aaPredicted RBP23.09■■□□□ 1.29
HMGB3-205ENST00000455596 BMP8AQ7Z5Y6 402 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 FAM212AQ96EL1 285 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 SUSD3Q96L08 255 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 MFSD14AQ96MC6 490 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 OLFML3Q9NRN5 406 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 TBC1D7Q9P0N9 293 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 EXOC7Q9UPT5 735 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 STYXL1Q9Y6J8 313 aa23.09■■□□□ 1.29
HMGB3-205ENST00000455596 ADRB2P07550 413 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 HNRNPA1P09651 372 aaKnown RBP eCLIP23.08■■□□□ 1.29
HMGB3-205ENST00000455596 HOXA9P31269 272 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 ATL3Q6DD88 541 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 ADALQ6DHV7 355 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 RSPO2Q6UXX9 243 aaPredicted RBP23.08■■□□□ 1.29
HMGB3-205ENST00000455596 UBALD2Q8IYN6 164 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 STRA6Q9BX79 667 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 LRRC27Q9C0I9 530 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 CUEDC2Q9H467 287 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 PANK4Q9NVE7 773 aa23.08■■□□□ 1.29
HMGB3-205ENST00000455596 AGO2Q9UKV8 859 aaKnown RBP23.08■■□□□ 1.29
HMGB3-205ENST00000455596 KMT2EQ8IZD2 1858 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 FRMD3A2A2Y4 597 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 TISP43B9A030 160 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 H7C4K7 107 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 GCNT3O95395 438 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 ASGR2P07307 311 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 GBP2P32456 591 aaPredicted RBP23.07■■□□□ 1.28
HMGB3-205ENST00000455596 AXDND1Q5T1B0 1012 aaPredicted RBP23.07■■□□□ 1.28
HMGB3-205ENST00000455596 L1TD1Q5T7N2 865 aaKnown RBP23.07■■□□□ 1.28
HMGB3-205ENST00000455596 KCNG4Q8TDN1 519 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 POMGNT1Q8WZA1 660 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 PBXIP1Q96AQ6 731 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 ACCSQ96QU6 501 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 TNMDQ9H2S6 317 aa23.07■■□□□ 1.28
HMGB3-205ENST00000455596 ARIH1Q9Y4X5 557 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms