RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NXNQ6DKJ4 435 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 RHOUQ7L0Q8 258 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 TCEAL8Q8IYN2 117 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 OR52N2Q8NGI0 321 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 SLC35B2Q8TB61 432 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 IFI44Q8TCB0 444 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 TSR2Q969E8 191 aaKnown RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 HPS3Q969F9 1004 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 MVB12AQ96EY5 273 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 CLPTM1LQ96KA5 538 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 MAP3K14Q99558 947 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 NDC1Q9BTX1 674 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 SLC46A2Q9BY10 475 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 CPEB1Q9BZB8 566 aaKnown RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 SLC12A5Q9H2X9 1139 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 NMRK2Q9NPI5 230 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 RUVBL1Q9Y265 456 aaKnown RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 TBKBP1A7MCY6 615 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 PRPF3O43395 683 aaKnown RBP5.16□□□□□ -1.58
USP40-209ENST00000452724 AP1G1O43747 822 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 GCP02774 474 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 SNRPA1P09661 255 aaKnown RBP5.16□□□□□ -1.58
USP40-209ENST00000452724 ATP5JP18859 108 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 MGAT1P26572 445 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 NANOS3P60323 173 aaKnown RBP5.16□□□□□ -1.58
USP40-209ENST00000452724 CTXN1P60606 82 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 ZNF267Q14586 743 aaPredicted RBP5.16□□□□□ -1.58
USP40-209ENST00000452724 RAB39AQ14964 217 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 BMT2Q1RMZ1 405 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 ATAT1Q5SQI0 421 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 OTUD7BQ6GQQ9 843 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 GADL1Q6ZQY3 521 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 EPM2AIP1Q7L775 607 aaPredicted RBP5.16□□□□□ -1.58
USP40-209ENST00000452724 GPRIN1Q7Z2K8 1008 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 GRAMD1CQ8IYS0 662 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 MYO1HQ8N1T3 1032 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 MAGEB6Q8N7X4 407 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 TFAP2CQ92754 450 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 MRGPRX4Q96LA9 322 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 CRAMP1Q96RY5 1269 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 AGAP2Q99490 1192 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 MRI1Q9BV20 369 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 SPON1Q9HCB6 807 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 ANLNQ9NQW6 1124 aa5.16□□□□□ -1.58
USP40-209ENST00000452724 GAGE12BA1L429 117 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 GAGE12HA6NDE8 117 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 KRT4P19013 534 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 CLRN1P58418 232 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 MLC1Q15049 377 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 THEMIS2Q5TEJ8 643 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 EFCAB12Q6NXP0 572 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 Q6ZPA2 131 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 ZFP28Q8NHY6 868 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 RGMAQ96B86 450 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 DMRTA2Q96SC8 542 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 TRPM5Q9NZQ8 1165 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 CALCOCO1Q9P1Z2 691 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 CHPF2Q9P2E5 772 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 SLC23A1Q9UHI7 598 aa5.15□□□□□ -1.59
USP40-209ENST00000452724 LRRC14BA6NHZ5 514 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 DIRC3C9JPN6 131 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 RNASET2O00584 256 aaKnown RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 SLC16A6O15403 523 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 B3GALT2O43825 422 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 SPATA31D3P0C874 917 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 APOBEC3AP31941 199 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 ZNF280AP59817 542 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 RAP2BP61225 183 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 CREMQ03060 361 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 TAP1Q03518 808 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 TLE1Q04724 770 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 CSRP2Q16527 193 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 ATP2B3Q16720 1220 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 MINDY4Q4G0A6 757 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 ATXN7L2Q5T6C5 722 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 ZNF529Q6P280 563 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 DRICH1Q6PGQ1 229 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 PCSK4Q6UW60 755 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 B3GNT9Q6UX72 402 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 SPATA31D4Q6ZUB0 917 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 SEM1Q6ZVN7 128 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 GDF7Q7Z4P5 450 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 PLXDC1Q8IUK5 500 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 WDR75Q8IWA0 830 aaKnown RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 RNF169Q8NCN4 708 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 OR10H5Q8NGA6 315 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 SLC35G2Q8TBE7 412 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 DIS3LQ8TF46 1054 aaKnown RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 C1GALT1C1Q96EU7 318 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 MYEOVQ96EZ4 313 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 TAAR9Q96RI9 348 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 MYOCQ99972 504 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 VRK1Q99986 396 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 MLST8Q9BVC4 326 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 C11orf54Q9H0W9 315 aaPredicted RBP5.14□□□□□ -1.59
USP40-209ENST00000452724 CYP4F11Q9HBI6 524 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 KMT5AQ9NQR1 393 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 PACSIN3Q9UKS6 424 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 POLHQ9Y253 713 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms