RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 CD300LGQ6UXG3 332 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 KRI1Q8N9T8 703 aaKnown RBP14.06□□□□□ -0.16
CHD3-206ENST00000452447 SLC7A14Q8TBB6 771 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 LRRC15Q8TF66 581 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 KCNN1Q92952 543 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 C18orf25Q96B23 403 aaPredicted RBP14.06□□□□□ -0.16
CHD3-206ENST00000452447 EPSTI1Q96J88 318 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 PLEKHA5Q9HAU0 1116 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 EPS15L1Q9UBC2 864 aa14.06□□□□□ -0.16
CHD3-206ENST00000452447 K7ELQ4 463 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 SYN3O14994 580 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 CXCL8P10145 99 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 LAMP2P13473 410 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 HOXA9P31269 272 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 HOXD11P31277 338 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 MCM4P33991 863 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 VCPP55072 806 aaKnown RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 RESTQ13127 1097 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 PTPAQ15257 358 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 VARS2Q5ST30 1063 aaKnown RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 FAM173BQ6P4H8 233 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 GRASPQ7Z6J2 395 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 NXPE3Q969Y0 559 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 MYADMQ96S97 322 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 FBXL21Q9UKT6 434 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 DUSP12Q9UNI6 340 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 SRPRBQ9Y5M8 271 aaKnown RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 H7C4K7 107 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 CCL16O15467 120 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 FSHRP23945 695 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 PTPN5P54829 565 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 PPP2R3AQ06190 1150 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 RSPO2Q6UXX9 243 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 USP49Q70CQ1 688 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 RTL10Q7L3V2 364 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 RSAD2Q8WXG1 361 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 KIF12Q96FN5 646 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 HAPLN2Q9GZV7 340 aa14.05□□□□□ -0.16
CHD3-206ENST00000452447 ZSCAN16Q9H4T2 348 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 RPF1Q9H9Y2 349 aaKnown RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 ZFP37Q9Y6Q3 630 aaPredicted RBP14.05□□□□□ -0.16
CHD3-206ENST00000452447 MEFVO15553 781 aaPredicted RBP14.04□□□□□ -0.16
CHD3-206ENST00000452447 XPOTO43592 962 aaKnown RBP14.04□□□□□ -0.16
CHD3-206ENST00000452447 PIGRP01833 764 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 ELF1P32519 619 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 TNFSF9P41273 254 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 ARPP19P56211 112 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 SPAG1Q07617 926 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 RRAGBQ5VZM2 374 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 APPL2Q8NEU8 664 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 PRSS33Q8NF86 280 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 ZNF461Q8TAF7 563 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 SUSD3Q96L08 255 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 STK17AQ9UEE5 414 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 TUBGCP4Q9UGJ1 667 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 FBXO2Q9UK22 296 aaPredicted RBP14.04□□□□□ -0.16
CHD3-206ENST00000452447 UBQLN1Q9UMX0 589 aaKnown RBP14.04□□□□□ -0.16
CHD3-206ENST00000452447 MTMR6Q9Y217 621 aa14.04□□□□□ -0.16
CHD3-206ENST00000452447 TTC26A0AVF1 554 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 OGTO15294 1046 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 STX6O43752 255 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 NMT1P30419 496 aaKnown RBP14.03□□□□□ -0.16
CHD3-206ENST00000452447 NUBP1P53384 320 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 NTHL1P78549 312 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 GTF2BQ00403 316 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 ROR1Q01973 937 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 SLC8B1Q6J4K2 584 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 SV2BQ7L1I2 683 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 DYMQ7RTS9 669 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 ALYREFQ86V81 257 aaKnown RBP14.03□□□□□ -0.16
CHD3-206ENST00000452447 SLC44A3Q8N4M1 653 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 FLCNQ8NFG4 579 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 FAM212AQ96EL1 285 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 CLIC6Q96NY7 704 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 MSTO1Q9BUK6 570 aa14.03□□□□□ -0.16
CHD3-206ENST00000452447 NOTCH4Q99466 2003 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 A0A0B4J269 797 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 LACTBL1A8MY62 500 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 PRRG1O14668 218 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 NARSO43776 548 aaKnown RBP14.02□□□□□ -0.16
CHD3-206ENST00000452447 LRG1P02750 347 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 CYP3A5P20815 502 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 CTXN3Q4LDR2 81 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 ASTLQ6HA08 431 aaPredicted RBP14.02□□□□□ -0.16
CHD3-206ENST00000452447 SLFN12LQ6IEE8 588 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 ZNF280DQ6N043 979 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 CCDC73Q6ZRK6 1079 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 MAP4K3Q8IVH8 894 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 CD302Q8IX05 232 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 USP28Q96RU2 1077 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 TSPAN18Q96SJ8 248 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 FIZ1Q96SL8 496 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 IRF2BPLQ9H1B7 796 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 FBXL5Q9UKA1 691 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 CDH7Q9ULB5 785 aa14.02□□□□□ -0.16
CHD3-206ENST00000452447 WDR27A2RRH5 827 aa14.01□□□□□ -0.17
CHD3-206ENST00000452447 ABLIM3O94929 683 aa14.01□□□□□ -0.17
CHD3-206ENST00000452447 CFHP08603 1231 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms