RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PRKCSHP14314 528 aaPredicted RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 RPL9P32969 192 aaKnown RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 GCLMP48507 274 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 SOX4Q06945 474 aaPredicted RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 PPP3CAQ08209 521 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 DSC1Q08554 894 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 SPOUT1Q5T280 376 aaKnown RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 SV2AQ7L0J3 742 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 TRAPPC11Q7Z392 1133 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 ZNF280BQ86YH2 543 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 COLGALT2Q8IYK4 626 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 SP7Q8TDD2 431 aaPredicted RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 TMEM175Q9BSA9 504 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 MTMR12Q9C0I1 747 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 NRDE2Q9H7Z3 1164 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 MMRN2Q9H8L6 949 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 TMEM8AQ9HCN3 771 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 TUBGCP4Q9UGJ1 667 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 ITGA11Q9UKX5 1188 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 R3HCC1Q9Y3T6 440 aaKnown RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 PCDHA11Q9Y5I1 949 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 GBF1Q92538 1859 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 CARNS1A5YM72 827 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 N4BP1O75113 896 aaKnown RBP17.04■□□□□ 0.32
USP40-206ENST00000443711 ALDH2P05091 517 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 LRPAP1P30533 357 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 FMO5P49326 533 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 MXI1P50539 228 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 RABGGTBP53611 331 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 COPB1P53618 953 aaKnown RBP17.04■□□□□ 0.32
USP40-206ENST00000443711 BIRC3Q13489 604 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 ZACNQ401N2 412 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 VWA3BQ502W6 1294 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 KRT39Q6A163 491 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 FAM109BQ6ICB4 259 aaPredicted RBP17.04■□□□□ 0.32
USP40-206ENST00000443711 C1orf127Q8N9H9 656 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 CWH43Q9H720 699 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 GOLGA2P5Q9HBQ8 144 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 TAB2Q9NYJ8 693 aa17.04■□□□□ 0.32
USP40-206ENST00000443711 MRPL42Q9Y6G3 142 aaKnown RBP17.04■□□□□ 0.32
USP40-206ENST00000443711 A0A1W2PPC1 479 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 PES1O00541 588 aaKnown RBP17.03■□□□□ 0.32
USP40-206ENST00000443711 PMM2O15305 246 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 P4HA2O15460 535 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 ZC3H11AO75152 810 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP40-206ENST00000443711 LAG3P18627 525 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 OR1G1P47890 313 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 GUCY2FP51841 1108 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 RBP5P82980 135 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 CETN1Q12798 172 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 TRPC3Q13507 836 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 RAB30Q15771 203 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 TDRD10Q5VZ19 366 aaKnown RBP17.03■□□□□ 0.32
USP40-206ENST00000443711 C15orf39Q6ZRI6 1047 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 FAM84AQ96KN4 292 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 COLEC11Q9BWP8 271 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 VPS16Q9H269 839 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 NDST4Q9H3R1 872 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 AAASQ9NRG9 546 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 DNAJB4Q9UDY4 337 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 MSRAQ9UJ68 235 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 FAN1Q9Y2M0 1017 aa17.03■□□□□ 0.32
USP40-206ENST00000443711 ANO9A1A5B4 782 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 CASTOR2A6NHX0 329 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 B4GALT3O60512 393 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 SERPINC1P01008 464 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 ITGB3P05106 788 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 GALTP07902 379 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 KRT19P08727 400 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 ALDH7A1P49419 539 aaKnown RBP17.02■□□□□ 0.32
USP40-206ENST00000443711 BCAR1P56945 870 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 MYL7Q01449 175 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 FILIP1LQ4L180 1135 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 MIIPQ5JXC2 388 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 PRPF38BQ5VTL8 546 aaKnown RBP17.02■□□□□ 0.32
USP40-206ENST00000443711 C9orf57Q5W0N0 161 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 DCLRE1AQ6PJP8 1040 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 ZNF558Q96NG5 402 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 HCSTQ9UBK5 93 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 AGAP1Q9UPQ3 857 aa17.02■□□□□ 0.32
USP40-206ENST00000443711 SCN1AP35498 2009 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 LCHNA4D1U4 455 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 PODXLO00592 558 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 PIRO00625 290 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 NRP1O14786 923 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CST3P01034 146 aaPredicted RBP17.01■□□□□ 0.31
USP40-206ENST00000443711 HLA-DRAP01903 254 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 POLR2BP30876 1174 aaKnown RBP17.01■□□□□ 0.31
USP40-206ENST00000443711 SLC11A1P49279 550 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CLCNKBP51801 687 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 FANCCQ00597 558 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 NCOA4Q13772 614 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 UPP1Q16831 310 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 UVSSAQ2YD98 709 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CBWD6Q4V339 395 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CBWD3Q5JTY5 395 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CBWD5Q5RIA9 395 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 KCNT2Q6UVM3 1135 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 APTXQ7Z2E3 356 aaKnown RBP17.01■□□□□ 0.31
USP40-206ENST00000443711 LRRC52Q8N7C0 313 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms