RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 TAP1Q03518 808 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 CACNB2Q08289 660 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 PDIA2Q13087 525 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 THOC5Q13769 683 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 KIAA1755Q5JYT7 1200 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 URGCPQ8TCY9 931 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 DEPDC1BQ8WUY9 529 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 CELF4Q9BZC1 486 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ASCC2Q9H1I8 757 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 LCMT1Q9UIC8 334 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 XRN1Q8IZH2 1706 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 IL18RAPO95256 599 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 FGFR4P22455 802 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 CUL2Q13617 745 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 VGLL4Q14135 290 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 EFHC2Q5JST6 749 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ZNF384Q8TF68 577 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 TACO1Q9BSH4 297 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 PLEKHH3Q7Z736 793 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 SPATS2Q86XZ4 545 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 C1orf131Q8NDD1 294 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 DNERQ8NFT8 737 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 ATL2Q8NHH9 583 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 RIN2Q8WYP3 895 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 DHX38Q92620 1227 aaKnown RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 BTBD6Q96KE9 485 aa13.01□□□□□ -0.33
TCOF1-205ENST00000439160 FHDC1Q9C0D6 1143 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-205ENST00000439160 RAD51CO43502 376 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 GAS2O43903 313 aaKnown RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 MMEP08473 750 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 PCK1P35558 622 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 SMTNL2Q2TAL5 461 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CYP4A22Q5TCH4 519 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CCNI2Q6ZMN8 369 aaPredicted RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 ZNF571Q7Z3V5 609 aaPredicted RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 SNF8Q96H20 258 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 ADAM33Q9BZ11 813 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 KCNMB3Q9NPA1 279 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 GPRC5DQ9NZD1 345 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 TACC3Q9Y6A5 838 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 PFDN6O15212 129 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CPB1P15086 417 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CARSP49589 748 aaKnown RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 CASP5P51878 434 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 ROR1Q01973 937 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 AP1B1Q10567 949 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 MTM1Q13496 603 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 RCN2Q14257 317 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 AMHR2Q16671 573 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 ZNF507Q8TCN5 953 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 DBR1Q9UK59 544 aaKnown RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 TRAF3IP3Q9Y228 551 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CXCL11O14625 94 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 KRT37O76014 449 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 GARTP22102 1010 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 GCLCP48506 637 aaPredicted RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 SLC12A3P55017 1021 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CAV1Q03135 178 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 SPOPLQ6IQ16 392 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 FAM47EQ6ZV65 393 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 AMIGO3Q86WK7 504 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 PPM1NQ8N819 430 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 TPCN2Q8NHX9 752 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 TRAPPC12Q8WVT3 735 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 OSBPL8Q9BZF1 889 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 WDR35Q9P2L0 1181 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 IQANK1A0A1B0GTG1 560 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CCDC160A6NGH7 325 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 RRN3P2A6NIE6 340 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 TISP43B9A030 160 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 EIF3EP60228 445 aaKnown RBP13□□□□□ -0.33
TCOF1-205ENST00000439160 CCDC38Q502W7 563 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 SLC35C1Q96A29 364 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 L2HGDHQ9H9P8 463 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 KIF9Q9HAQ2 790 aa13□□□□□ -0.33
TCOF1-205ENST00000439160 CACNA1FO60840 1977 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 A0A087WZ62 844 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 F8VZ95 297 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 H3BRB1 525 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 PDHXO00330 501 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 IRF6O14896 467 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 EPHB1P54762 984 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 TATDN1Q6P1N9 297 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 NOTUMQ6P988 496 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 TRAPPC11Q7Z392 1133 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 USP38Q8NB14 1042 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 TTC17Q96AE7 1141 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 ELAC2Q9BQ52 826 aaKnown RBP12.99□□□□□ -0.33
TCOF1-205ENST00000439160 FDXACB1Q9BRP7 624 aaPredicted RBP12.99□□□□□ -0.33
TCOF1-205ENST00000439160 TUT1Q9H6E5 874 aaKnown RBP12.99□□□□□ -0.33
TCOF1-205ENST00000439160 GTF3C4Q9UKN8 822 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 CYP3A4P08684 503 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 ZNF286BP0CG31 522 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 SLC20A1Q8WUM9 679 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 WDR18Q9BV38 432 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 OSGEPQ9NPF4 335 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 YDJCA8MPS7 323 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 CYP11B1P15538 503 aa12.99□□□□□ -0.33
TCOF1-205ENST00000439160 ALDH5A1P51649 535 aaPredicted RBP12.99□□□□□ -0.33
TCOF1-205ENST00000439160 FAM133BQ5BKY9 247 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms