RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ITGA4P13612 1032 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 MLH1P40692 756 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 OR1G1P47890 313 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 PTENP60484 403 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 PSMD2Q13200 908 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 DMP1Q13316 513 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-208ENST00000437607 AMHR2Q16671 573 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 L1TD1Q5T7N2 865 aaKnown RBP13.27□□□□□ -0.29
PTPRF-208ENST00000437607 C11orf57Q6ZUT1 292 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-208ENST00000437607 STXBP4Q6ZWJ1 553 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 MLKLQ8NB16 471 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 RSAD2Q8WXG1 361 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 CPB2Q96IY4 423 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 ZFP42Q96MM3 310 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 GAD1Q99259 594 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 POLR3FQ9H1D9 316 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-208ENST00000437607 RXFP1Q9HBX9 757 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 LARSQ9P2J5 1176 aaKnown RBP13.27□□□□□ -0.29
PTPRF-208ENST00000437607 GDAQ9Y2T3 454 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 SPDYE4A6NLX3 237 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 K7ENM7 598 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 PSMA7O14818 248 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 RFPL2O75678 378 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 URODP06132 367 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 MYH11P35749 1972 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 SCNN1GP51170 649 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 ZNF131P52739 623 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 MBTD1Q05BQ5 628 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 MAPK7Q13164 816 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 IFNLR1Q8IU57 520 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-208ENST00000437607 CCDC105Q8IYK2 499 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 SMYD4Q8IYR2 804 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-208ENST00000437607 MYCT1Q8N699 235 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 GSTCDQ8NEC7 633 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 FAM200AQ8TCP9 573 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 ASAP3Q8TDY4 903 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 TCP11Q8WWU5 503 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 ZNF707Q96C28 371 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-208ENST00000437607 B3GALT6Q96L58 329 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 IFT74Q96LB3 600 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 RHOBTB2Q9BYZ6 727 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 WDR6Q9NNW5 1121 aaKnown RBP13.26□□□□□ -0.29
PTPRF-208ENST00000437607 UBN1Q9NPG3 1134 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 GPRC5CQ9NQ84 441 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 OLFML3Q9NRN5 406 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 CTNND2Q9UQB3 1225 aa13.26□□□□□ -0.29
PTPRF-208ENST00000437607 CLUHO75153 1309 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 UBE4BO95155 1302 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 KRBA1A5PL33 1030 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 ERLIN2O94905 339 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 GCNT3O95395 438 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 ADH1AP07327 375 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 SPATA31D3P0C874 917 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 PLS3P13797 630 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 ARF4P18085 180 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-208ENST00000437607 AXLP30530 894 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 GLUD2P49448 558 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 ZNF165P49910 485 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 DSG1Q02413 1049 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 EHHADHQ08426 723 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 ALCAMQ13740 583 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 CAPSQ13938 189 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 PPP2R5AQ15172 486 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 KLHL10Q6JEL2 608 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 NOTUMQ6P988 496 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 SPATA31D4Q6ZUB0 917 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 SIX5Q8N196 739 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 KIAA0895Q8NCT3 520 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 MYADMQ96S97 322 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 GPR62Q9BZJ7 368 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 NXF3Q9H4D5 531 aaKnown RBP13.25□□□□□ -0.29
PTPRF-208ENST00000437607 MRPL44Q9H9J2 332 aaKnown RBP13.25□□□□□ -0.29
PTPRF-208ENST00000437607 C17orf75Q9HAS0 396 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 SLC39A2Q9NP94 309 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 CHST7Q9NS84 486 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 TBC1D7Q9P0N9 293 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 IGSF9Q9P2J2 1179 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 EPS15L1Q9UBC2 864 aa13.25□□□□□ -0.29
PTPRF-208ENST00000437607 OTOGLQ3ZCN5 2332 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 BECN2A8MW95 431 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 H0YCG3 227 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 INO80B-WBP1J3KQ70 363 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 B4GALT5O43286 388 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 GLUD1P00367 558 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 CFHP08603 1231 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 BMP6P22004 513 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 GBP2P32456 591 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-208ENST00000437607 ARL2P36404 184 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 SMTNP53814 917 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 POU5F1BQ06416 359 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 PAK1Q13153 545 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 PCBP1Q15365 356 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPRF-208ENST00000437607 ANGPT1Q15389 498 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 COBLL1Q53SF7 1204 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 CT47A1Q5JQC4 288 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-208ENST00000437607 LILRA6Q6PI73 481 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 CDR2LQ86X02 465 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-208ENST00000437607 DAW1Q8N136 415 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 AOPEPQ8N6M6 819 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 DTWD2Q8NBA8 298 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms