RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TBC1D13Q9NVG8 400 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 DPP3Q9NY33 737 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 TAB2Q9NYJ8 693 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 PLAGL2Q9UPG8 496 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 COQ4Q9Y3A0 265 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 INSL6Q9Y581 213 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 PTPRJQ12913 1337 aa13.31□□□□□ -0.28
LINC00339-204ENST00000434233 GTPBP10A4D1E9 387 aaKnown RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 DDHD2O94830 711 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 CST3P01034 146 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 GATMP50440 423 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 UBASH3AP57075 661 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 RBP5P82980 135 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 DSC1Q08554 894 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 CETN1Q12798 172 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 NR1I3Q14994 352 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 FAM117BQ6P1L5 589 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 TMCO2Q7Z6W1 182 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 C18orf25Q96B23 403 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 DDX27Q96GQ7 796 aaKnown RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 UROC1Q96N76 676 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 NAP1L5Q96NT1 182 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 ZBED2Q9BTP6 218 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 MTMR12Q9C0I1 747 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 NRDE2Q9H7Z3 1164 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 ITGA11Q9UKX5 1188 aa13.3□□□□□ -0.28
LINC00339-204ENST00000434233 MKI67P46013 3256 aaKnown RBP13.3□□□□□ -0.28
LINC00339-204ENST00000434233 A0A1B0GTH6 734 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 ANO9A1A5B4 782 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 FSD2A1L4K1 749 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CARNS1A5YM72 827 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 GOLGA6L3A6NEY3 463 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 PIRO00625 290 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 PHACTR2O75167 634 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 ALDH2P05091 517 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 MXI1P50539 228 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 RNASELQ05823 741 aaKnown RBP13.29□□□□□ -0.28
LINC00339-204ENST00000434233 SOX4Q06945 474 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-204ENST00000434233 TRPC3Q13507 836 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 BTG3Q14201 252 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CBWD6Q4V339 395 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CBWD3Q5JTY5 395 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CBWD5Q5RIA9 395 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 TDRD10Q5VZ19 366 aaKnown RBP13.29□□□□□ -0.28
LINC00339-204ENST00000434233 SARM1Q6SZW1 724 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 ZNF280BQ86YH2 543 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 COLGALT2Q8IYK4 626 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 LRRC43Q8N309 656 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 C1orf127Q8N9H9 656 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 EHBP1Q8NDI1 1231 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 FBXL13Q8NEE6 735 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CXorf38Q8TB03 319 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 YME1L1Q96TA2 773 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 TMEM175Q9BSA9 504 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 CWH43Q9H720 699 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 MMRN2Q9H8L6 949 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 TUBGCP4Q9UGJ1 667 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 SIX4Q9UIU6 781 aa13.29□□□□□ -0.28
LINC00339-204ENST00000434233 R3HCC1Q9Y3T6 440 aaKnown RBP13.29□□□□□ -0.28
LINC00339-204ENST00000434233 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-204ENST00000434233 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-204ENST00000434233 LGALS16A8MUM7 142 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 PES1O00541 588 aaKnown RBP13.28□□□□□ -0.28
LINC00339-204ENST00000434233 CBFA2T2O43439 604 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 VNN1O95497 513 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 ITGB3P05106 788 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 PAX3P23760 479 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 ATICP31939 592 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 BIRC3Q13489 604 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 GSE1Q14687 1217 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 SGSM1Q2NKQ1 1148 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 FKBP15Q5T1M5 1219 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 C9orf57Q5W0N0 161 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 DCLRE1AQ6PJP8 1040 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 GBP6Q6ZN66 633 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 FIBCD1Q8N539 461 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-204ENST00000434233 RAB20Q9NX57 234 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 IFNKQ9P0W0 207 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 AGAP1Q9UPQ3 857 aa13.28□□□□□ -0.28
LINC00339-204ENST00000434233 TEX33O43247 280 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 TLL1O43897 1013 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 STAU1O95793 577 aaKnown RBP13.27□□□□□ -0.29
LINC00339-204ENST00000434233 HLA-DRAP01903 254 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 TPM3P06753 285 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 GALTP07902 379 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 KRT19P08727 400 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
LINC00339-204ENST00000434233 CLCNKBP51801 687 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 GUCY2FP51841 1108 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 MYL7Q01449 175 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 UBXN1Q04323 297 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 KCNMA1Q12791 1236 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 NCOA4Q13772 614 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 UPP1Q16831 310 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 EXOC3L4Q17RC7 722 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 PAN2Q504Q3 1202 aaKnown RBP13.27□□□□□ -0.29
LINC00339-204ENST00000434233 EPC2Q52LR7 807 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 TDHQ8IZJ6 230 aa13.27□□□□□ -0.29
LINC00339-204ENST00000434233 LRRC52Q8N7C0 313 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms