RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 SPIRE2Q8WWL2 714 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 PRMT1Q99873 361 aaKnown RBP15.25■□□□□ 0.03
LIG1-202ENST00000427526 TEX13BQ9BXU2 312 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 A1CFQ9NQ94 594 aaKnown RBP15.25■□□□□ 0.03
LIG1-202ENST00000427526 POLR2AP24928 1970 aaKnown RBP15.25■□□□□ 0.03
LIG1-202ENST00000427526 RGS20O76081 388 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 OAZ1P54368 228 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 KRT76Q01546 638 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 GCNT1Q02742 428 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 CALCOCO2Q13137 446 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 TREML2Q5T2D2 321 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 EXOC3L1Q86VI1 746 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 TAX1BP1Q86VP1 789 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 CCDC197Q8NCU1 140 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 STMN4Q9H169 189 aaPredicted RBP15.25■□□□□ 0.03
LIG1-202ENST00000427526 CDC42EP4Q9H3Q1 356 aaKnown RBP15.25■□□□□ 0.03
LIG1-202ENST00000427526 KMT5AQ9NQR1 393 aa15.25■□□□□ 0.03
LIG1-202ENST00000427526 CCT8L1PA6NM43 557 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 SORBS3O60504 671 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 KRT17Q04695 432 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 ENPEPQ07075 957 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 PPP1R7Q15435 360 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 CNGA2Q16280 664 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 SGO2Q562F6 1265 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 LRRC34Q8IZ02 419 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 FUKQ8N0W3 1084 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 PLVAPQ9BX97 442 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 HOXC10Q9NYD6 342 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 CYP39A1Q9NYL5 469 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 RLFQ13129 1914 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 MROH7Q68CQ1 1323 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 CALCAP01258 141 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 ITIH2P19823 946 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 CCND2P30279 289 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 SATB1Q01826 763 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 XRCC4Q13426 336 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 ITIH4Q14624 930 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 LLGL1Q15334 1064 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 MCOLN2Q8IZK6 566 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 CEP120Q8N960 986 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 HERPUD2Q9BSE4 406 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 DDX23Q9BUQ8 820 aaKnown RBP15.24■□□□□ 0.03
LIG1-202ENST00000427526 TRIM7Q9C029 511 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 C17orf75Q9HAS0 396 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 ADARB2Q9NS39 739 aaKnown RBP15.24■□□□□ 0.03
LIG1-202ENST00000427526 CHST7Q9NS84 486 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 ANAPC7Q9UJX3 599 aa15.24■□□□□ 0.03
LIG1-202ENST00000427526 STBD1O95210 358 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 SCP2P22307 547 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 MAPK4P31152 587 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 C15orf39Q6ZRI6 1047 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 ENOSF1Q7L5Y1 443 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 NSUN6Q8TEA1 469 aaKnown RBP15.23■□□□□ 0.03
LIG1-202ENST00000427526 DCPSQ96C86 337 aaKnown RBP15.23■□□□□ 0.03
LIG1-202ENST00000427526 AVENQ9NQS1 362 aaPredicted RBP15.23■□□□□ 0.03
LIG1-202ENST00000427526 MYPNQ86TC9 1320 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 ADGRA3Q8IWK6 1321 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 SOX10P56693 466 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 TAOK1Q7L7X3 1001 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 CCDC25Q86WR0 208 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 POMGNT1Q8WZA1 660 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 PI4K2AQ9BTU6 479 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 MOV10L1Q9BXT6 1211 aaKnown RBP15.23■□□□□ 0.03
LIG1-202ENST00000427526 ACAD9Q9H845 621 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 PDLIM7Q9NR12 457 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 TCEAL9Q9UHQ7 104 aa15.23■□□□□ 0.03
LIG1-202ENST00000427526 ATP2A1O14983 1001 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 ZC3H11AO75152 810 aaKnown RBP eCLIP15.22■□□□□ 0.032e-8■■■■□ 25.1
LIG1-202ENST00000427526 DNAJC8O75937 253 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 SP4Q02446 784 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 MKRN4PQ13434 485 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 SNX1Q13596 522 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 USP37Q86T82 979 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 NLRX1Q86UT6 975 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SULF1Q8IWU6 871 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 GPD1LQ8N335 351 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 RDM1Q8NG50 284 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 ZNF516Q92618 1163 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 FAM81BQ96LP2 452 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SERPINB12Q96P63 405 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SENP7Q9BQF6 1050 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 PARP14Q460N5 1801 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 ZNF862O60290 1169 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 KRT5P13647 590 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 CHKAP35790 457 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SLC1A1P43005 524 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 PTK6Q13882 451 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 LONRF1Q17RB8 773 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 CCDC38Q502W7 563 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 SH3D19Q5HYK7 790 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 CYB5D1Q6P9G0 228 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 FAM43BQ6ZT52 329 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 SYDE1Q6ZW31 735 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 MOB2Q70IA6 237 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 ANKS4BQ8N8V4 417 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 DDX27Q96GQ7 796 aaKnown RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 HAUS2Q9NVX0 235 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 PCDHA10Q9Y5I2 948 aa15.22■□□□□ 0.03
LIG1-202ENST00000427526 COL11A1P12107 1806 aaPredicted RBP15.22■□□□□ 0.03
LIG1-202ENST00000427526 PHIPQ8WWQ0 1821 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms