RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TGFBRAP1Q8WUH2 860 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 DYDC2Q96IM9 177 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 LMF1Q96S06 567 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 VPS33BQ9H267 617 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PRDM12Q9H4Q4 367 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 TOPORSQ9NS56 1045 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 C9orf78Q9NZ63 289 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 RAPGEFL1Q9UHV5 662 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 ST6GALNAC2Q9UJ37 374 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 NOB1Q9ULX3 412 aaKnown RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 HDAC5Q9UQL6 1122 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 NR2E1Q9Y466 385 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 ATP6V0A2Q9Y487 856 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 AFDNP55196 1824 aaKnown RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 KIF16BQ96L93 1317 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 hCG_2014768A0A024R1R8 64 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 GRM8O00222 908 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CDC14BO60729 498 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 OPHN1O60890 802 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RAB11FIP3O75154 756 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CSF1RP07333 972 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 SYN1P17600 705 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 POU3F3P20264 500 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 NFKB2Q00653 900 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 AMPD3Q01432 767 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ZFYVE27Q5T4F4 411 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 TRIM68Q6AZZ1 485 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CCDC62Q6P9F0 684 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CXXC5Q7LFL8 322 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 UBE3BQ7Z3V4 1068 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 PASD1Q8IV76 773 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ZZZ3Q8IYH5 903 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 SUPT20HQ8NEM7 779 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CXorf38Q8TB03 319 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 NEIL1Q96FI4 390 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CDC5LQ99459 802 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 PSMD1Q99460 953 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 SSBP3Q9BWW4 388 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 TAOK3Q9H2K8 898 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 DENND2AQ9ULE3 1009 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 USP18Q9UMW8 372 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RBM8AQ9Y5S9 174 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 SLC4A7Q9Y6M7 1214 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 UTYO14607 1347 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ABCC4O15439 1325 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 KIAA1551Q9HCM1 1747 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 LPLP06858 475 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 BUD31P41223 144 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RAC3P60763 192 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 LRRC32Q14392 662 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ZMAT1Q5H9K5 638 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ZKSCAN2Q63HK3 967 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 KIAA1841Q6NSI8 718 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 TIGD7Q6NT04 549 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 GLB1LQ6UWU2 654 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 PLEKHH3Q7Z736 793 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CXorf67Q86X51 503 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD18AQ8IVF6 992 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ZNF610Q8N9Z0 462 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CELF1Q92879 486 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 FERMT2Q96AC1 680 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 LOXL4Q96JB6 756 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 OR14A2Q96R54 314 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RBM15Q96T37 977 aaKnown RBP eCLIP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 NOL10Q9BSC4 688 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RTFDC1Q9BY42 306 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 OR10A2Q9H208 303 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 POLR3BQ9NW08 1133 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 KCMF1Q9P0J7 381 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RNF181Q9P0P0 153 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 RTL9Q8NET4 1388 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CACNA1FO60840 1977 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD18BA2A2Z9 1011 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 NPEPPSL1A6NEC2 478 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 BCAR3O75815 825 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 EPHB4P54760 987 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 IGBP1P78318 339 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 PHC1P78364 1004 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ICAM4Q14773 271 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 DGKDQ16760 1214 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ATF7IPQ6VMQ6 1270 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 USP30Q70CQ3 517 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 KANSL1Q7Z3B3 1105 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 TAX1BP1Q86VP1 789 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 CFHR4Q92496 578 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 C8orf49Q96NF6 230 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 USP44Q9H0E7 712 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 C12orf65Q9H3J6 166 aaKnown RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 OAZ3Q9UMX2 235 aa3.06□□□□□ -1.92
VPS13A-208ENST00000423463 N4BP2Q86UW6 1770 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD31Q8N7Z5 1873 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 A0A0A6YYK5 440 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PRSS38A1L453 326 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 B8ZZF3 427 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 K7ESM1 405 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ARHGAP6O43182 974 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 FOXS1O43638 330 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 EYA4O95677 639 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 GNAI3P08754 354 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms