RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NOP14P78316 857 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 CCZ1BP86790 482 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 CCZ1P86791 482 aaPredicted RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 FAAP100Q0VG06 881 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 DSC3Q14574 896 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 TDRD12Q587J7 1177 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 HABP4Q5JVS0 413 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 GJB7Q6PEY0 223 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 FAM43BQ6ZT52 329 aaPredicted RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 ENOSF1Q7L5Y1 443 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 BAP1Q92560 729 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 APBB2Q92870 758 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 PI4K2AQ9BTU6 479 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 STK33Q9BYT3 514 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 TMX1Q9H3N1 280 aa18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 UBQLN1Q9UMX0 589 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 MKI67P46013 3256 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-202ENST00000421922 VNN1O95497 513 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 ITGB3P05106 788 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 TBXAS1P24557 533 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 MBTPS1Q14703 1052 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 SGSM1Q2NKQ1 1148 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 ZNF699Q32M78 642 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 ZSCAN30Q86W11 494 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 ARHGEF19Q8IW93 802 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 SYN2Q92777 582 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 TRAIPQ9BWF2 469 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 OSBPL7Q9BZF2 842 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 RNF39Q9H2S5 420 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 DEF6Q9H4E7 631 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 UBN1Q9NPG3 1134 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 DPP3Q9NY33 737 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 GIT1Q9Y2X7 761 aa18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-202ENST00000421922 A0A0U1RQF3 1178 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 MGEA5O60502 916 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 FERP16591 822 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 CCL23P55773 120 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 RBP5P82980 135 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 ARID5AQ03989 594 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 DRAP1Q14919 205 aaPredicted RBP18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 LRRC26Q2I0M4 334 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 GLRA4Q5JXX5 417 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 PHLDB3Q6NSJ2 640 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 TAF4BQ92750 862 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 PRDM5Q9NQX1 630 aaPredicted RBP18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 SLC38A7Q9NVC3 462 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 PLAGL2Q9UPG8 496 aa18.42■□□□□ 0.54
CCDC28B-202ENST00000421922 F8VZ95 297 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 NBNO60934 754 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 ZNF623O75123 536 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 LRRN2O75325 713 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 OFD1O75665 1012 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 IPO7O95373 1038 aaKnown RBP18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 P4HA1P13674 534 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 ATF7P17544 494 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 POLR2BP30876 1174 aaKnown RBP18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 ATICP31939 592 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 CYP2C18P33260 490 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 CYLC1P35663 651 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 SOX5P35711 763 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 USP8P40818 1118 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 MYL6P60660 151 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 GCNT1Q02742 428 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 MYO1EQ12965 1108 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 DPY19L2P1Q6NXN4 242 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 SLC24A5Q71RS6 500 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 C1orf127Q8N9H9 656 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 SCLYQ96I15 445 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 RSAD1Q9HA92 442 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 RGS18Q9NS28 235 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 AGAP1Q9UPQ3 857 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 SCN5AQ14524 2016 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 UMODL1Q5DID0 1318 aa18.41■□□□□ 0.54
CCDC28B-202ENST00000421922 SMIM28A0A1B0GU29 152 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 MEFVO15553 781 aaPredicted RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 ASS1P00966 412 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 SERPING1P05155 500 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 KCNE1P15382 129 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 HNRNPH3P31942 346 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 MLH1P40692 756 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 JAM2P57087 298 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 YWHAEP62258 255 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 KLHL30Q0D2K2 578 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 MEA1Q16626 185 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 PLEKHG4Q58EX7 1191 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 ZNF667Q5HYK9 610 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 MRPL10Q7Z7H8 261 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 ECHDC2Q86YB7 292 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 LPPQ93052 612 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 ZNF560Q96MR9 790 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 NIF3L1Q9GZT8 377 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 RNF216Q9NWF9 866 aaPredicted RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 AJAP1Q9UKB5 411 aaPredicted RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TBX21Q9UL17 535 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 BZW2Q9Y6E2 419 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 GFPT2O94808 682 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 FECHP22830 423 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 RFC2P35250 354 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 CUL2Q13617 745 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms