RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 HAPLN2Q9GZV7 340 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 ADAMTS10Q9H324 1103 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 TMX1Q9H3N1 280 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 PDE11AQ9HCR9 933 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 PTPRHQ9HD43 1115 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 SIX2Q9NPC8 291 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 KCND1Q9NSA2 647 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 DNAJC12Q9UKB3 198 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 PLAGL2Q9UPG8 496 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 PHF24Q9UPV7 400 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 USP20Q9Y2K6 914 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 PPP2R2CQ9Y2T4 447 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 COQ4Q9Y3A0 265 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.43□□□□□ -1.38
HMGB3-202ENST00000419110 BZW2Q9Y6E2 419 aaKnown RBP6.43□□□□□ -1.38
HMGB3-202ENST00000419110 KIAA1671Q9BY89 1806 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 HTTP42858 3142 aa6.43□□□□□ -1.38
HMGB3-202ENST00000419110 FNDC1Q4ZHG4 1894 aaPredicted RBP6.43□□□□□ -1.38
HMGB3-202ENST00000419110 SMAPO00193 183 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 B4GALT4O60513 344 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RPS6KA5O75582 802 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RECQL4O94761 1208 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 GFPT2O94808 682 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 NOL4O94818 638 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 NDUFA10O95299 355 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 STAG3L1P0CL83 205 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 P4HA1P13674 534 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CLCN1P35523 988 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 SOX5P35711 763 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 THPOP40225 353 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 TNFSF9P41273 254 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RAB27AP51159 221 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 MFAP3P55082 362 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 C1QTNF8P60827 252 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 OSTNP61366 133 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CLDN10P78369 228 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ZNF200P98182 395 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 GCNT1Q02742 428 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ARID5AQ03989 594 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 NCOA4Q13772 614 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ARHGAP44Q17R89 818 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ZNF699Q32M78 642 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 C1orf220Q5T0J3 134 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 TDRD10Q5VZ19 366 aaKnown RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 E4F1Q66K89 784 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CCSAPQ6IQ19 270 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CRELD2Q6UXH1 353 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RAD9BQ6WBX8 426 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 TOGARAM2Q6ZUX3 1019 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 SV2AQ7L0J3 742 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CTU1Q7Z7A3 348 aaKnown RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RPAINQ86UA6 219 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 FAM228AQ86W67 206 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CDR2LQ86X02 465 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CD302Q8IX05 232 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 C17orf53Q8N3J3 647 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CEP120Q8N960 986 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ACRBPQ8NEB7 543 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CAGE1Q8TC20 777 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 TAS1R2Q8TE23 839 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 TATDN2Q93075 761 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 SNX27Q96L92 541 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ZNF560Q96MR9 790 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ACAP3Q96P50 834 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RPS6KC1Q96S38 1066 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 IFIH1Q9BYX4 1025 aaKnown RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 CELF4Q9BZC1 486 aaKnown RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 NIF3L1Q9GZT8 377 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 UNC93B1Q9H1C4 597 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 ASB7Q9H672 318 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 NHEJ1Q9H9Q4 299 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 PAK6Q9NQU5 681 aaPredicted RBP6.42□□□□□ -1.38
HMGB3-202ENST00000419110 RAB20Q9NX57 234 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 PTPN22Q9Y2R2 807 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 DERAQ9Y315 318 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 C2CD2Q9Y426 696 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 PTPRJQ12913 1337 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 PTPRDP23468 1912 aa6.42□□□□□ -1.38
HMGB3-202ENST00000419110 A0A1B0GUA9 196 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 EIF3CLB5ME19 914 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 TLR3O15455 904 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 KRT86O43790 486 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 KIF5CO60282 957 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 CSDE1O75534 798 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 TUBB4AP04350 444 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 NFICP08651 508 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 IQCF3P0C7M6 154 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 CCL5P13501 91 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 KRT5P13647 590 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 FGFR4P22455 802 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 EIF4A3P38919 411 aaKnown RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 USP8P40818 1118 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 PRKCIP41743 596 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 VAV2P52735 878 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 MCCD1P59942 119 aaPredicted RBP6.41□□□□□ -1.38
HMGB3-202ENST00000419110 APBA1Q02410 837 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 MGAT3Q09327 533 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 CUL2Q13617 745 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 HIC1Q14526 733 aa6.41□□□□□ -1.38
HMGB3-202ENST00000419110 MTF1Q14872 753 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms