RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HADHQ16836 314 aaKnown RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 CST9Q5W186 159 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 C11orf63Q6NUN7 778 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 NPLOC4Q8TAT6 608 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 KIF12Q96FN5 646 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 OSBPL9Q96SU4 736 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 RAB17Q9H0T7 212 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 AVENQ9NQS1 362 aaPredicted RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 KCNK3O14649 394 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 SEPT4O43236 478 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 ASTE1Q2TB18 679 aaPredicted RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 ILDR2Q71H61 639 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 FGD4Q96M96 766 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CCDC113Q9H0I3 377 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 SETD4Q9NVD3 440 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 PCDHGC5Q9Y5F6 944 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 TRPV2Q9Y5S1 764 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CCDC151A5D8V7 595 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 CAND2O75155 1236 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 TADA3O75528 432 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 C4BPAP04003 597 aaKnown RBP8.96□□□□□ -0.97
USP54-203ENST00000418501 PLEKP08567 350 aaPredicted RBP8.96□□□□□ -0.97
USP54-203ENST00000418501 CRHR2Q13324 411 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 ELF2Q15723 593 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 PHLDB3Q6NSJ2 640 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 HDXQ7Z353 690 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 MMS19Q96T76 1030 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 CDT1Q9H211 546 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 SNX25Q9H3E2 840 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 RNPEPQ9H4A4 650 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 ADAM22Q9P0K1 906 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 CNOT8Q9UFF9 292 aaKnown RBP8.96□□□□□ -0.97
USP54-203ENST00000418501 RASSF10A6NK89 507 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 RNF225M0QZC1 329 aaPredicted RBP8.96□□□□□ -0.97
USP54-203ENST00000418501 IGF2BP3O00425 579 aaKnown RBP eCLIP8.96□□□□□ -0.97
USP54-203ENST00000418501 PEX10O60683 326 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 MAP2K2P36507 400 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 DLG4P78352 724 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 USP38Q8NB14 1042 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 GRK7Q8WTQ7 553 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 PARVAQ9NVD7 372 aa8.96□□□□□ -0.97
USP54-203ENST00000418501 PIN4Q9Y237 131 aaKnown RBP8.96□□□□□ -0.97
USP54-203ENST00000418501 HMGCRP04035 888 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 EIF4BP23588 611 aaKnown RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 CYP2C19P33261 490 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 OSTNP61366 133 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 PAK2Q13177 524 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 SV2CQ496J9 727 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 TWF2Q6IBS0 349 aaKnown RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 ERICH1Q86X53 443 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 PTPN18Q99952 460 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 FERMT1Q9BQL6 677 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 C16orf70Q9BSU1 422 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 XPNPEP3Q9NQH7 507 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 IP6K2Q9UHH9 426 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 RPS6KA5O75582 802 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 ZNF189O75820 626 aaPredicted RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 TNNT3P45378 269 aaPredicted RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 HADHBP55084 474 aaKnown RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 LMNB2Q03252 620 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 DNAJC24Q6P3W2 148 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 METTL23Q86XA0 190 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 ARHGEF19Q8IW93 802 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 ZNF564Q8TBZ8 553 aaPredicted RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 GLT1D1Q96MS3 346 aa8.96□□□□□ -0.98
USP54-203ENST00000418501 NXF1Q9UBU9 619 aaKnown RBP8.96□□□□□ -0.98
USP54-203ENST00000418501 KBTBD13C9JR72 458 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 DDX3XO00571 662 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP54-203ENST00000418501 VTNP04004 478 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 FAM163BP0C2L3 166 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 DARSP14868 501 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 RWDD2BP57060 319 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 GJA9P57773 515 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 C1QBPQ07021 282 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 CLEC16AQ2KHT3 1053 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 GJB7Q6PEY0 223 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TPCN2Q8NHX9 752 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TRAPPC12Q8WVT3 735 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TNIP3Q96KP6 325 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 DPP3Q9NY33 737 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 POLR2AP24928 1970 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 ADGRA3Q8IWK6 1321 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 GOLGA6L10A6NI86 522 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TMEM110-MUSTN1A8MSY1 372 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TISP43B9A030 160 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 NPTXRO95502 500 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 ASS1P00966 412 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 SETSIPP0DME0 302 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TCEAL1Q15170 157 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 SGO2Q562F6 1265 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 CROCCP2Q86T23 111 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 SLC35G2Q8TBE7 412 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 CAPNS2Q96L46 248 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 LACRTQ9GZZ8 138 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TSPYL1Q9H0U9 437 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 ISCUQ9H1K1 167 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TMEM51Q9NW97 253 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 AGAP1Q9UPQ3 857 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 UTP11Q9Y3A2 253 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 REXO2Q9Y3B8 237 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms