RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CYP4A11Q02928 519 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 CDK18Q07002 472 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 MCL1Q07820 350 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 MESDQ14696 234 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 LBRQ14739 615 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 SKIV2LQ15477 1246 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGAP44Q17R89 818 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ABCB5Q2M3G0 1257 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC45A4Q5BKX6 768 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC27A3Q5K4L6 730 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 STRIP1Q5VSL9 837 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TBC1D1Q86TI0 1168 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TRABD2AQ86V40 505 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 MAP4K3Q8IVH8 894 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TPH2Q8IWU9 490 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKLE1Q8NAG6 615 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 PROCA1Q8NCQ7 364 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 DYDC1Q8WWB3 177 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF570Q96NI8 536 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 GPR101Q96P66 508 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 MXRA8Q9BRK3 442 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 LXNQ9BS40 222 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 KCNG1Q9UIX4 513 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 EFR3BQ9Y2G0 817 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 TMX2Q9Y320 296 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 ZHX2Q9Y6X8 837 aa6.11□□□□□ -1.43
CCDC88A-203ENST00000412148 UMODL1Q5DID0 1318 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 TCRBV7S2A1N4TA0A589 114 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MPHOSPH10O00566 681 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 C2CD2LO14523 706 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 LRRN2O75325 713 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SGPL1O95470 568 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CLTAP09496 248 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CALB2P22676 271 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 STX2P32856 288 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 COPB2P35606 906 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ITGA8P53708 1063 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MGAT5Q09328 741 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MPP2Q14168 576 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 LONRF1Q17RB8 773 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ACCSLQ4AC99 568 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PADI6Q6TGC4 694 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SH3BP5LQ7L8J4 393 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ECHDC2Q86YB7 292 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PHF13Q86YI8 300 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MCOLN2Q8IZK6 566 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SYCP3Q8IZU3 236 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PIGOQ8TEQ8 1089 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PARD3BQ8TEW8 1205 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 FBXO41Q8TF61 875 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CHURC1Q8WUH1 139 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF653Q96CK0 615 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 NT5C1BQ96P26 610 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SENP7Q9BQF6 1050 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ZC3H12CQ9C0D7 883 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MMADHCQ9H3L0 296 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 RNPEPL1Q9HAU8 725 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CREBZFQ9NS37 354 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 LRRC4BQ9NT99 713 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 WRAP73Q9P2S5 460 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ANAPC5Q9UJX4 755 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 NAALADL1Q9UQQ1 740 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 IPO5O00410 1097 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 BACH1O14867 736 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 DHX15O43143 795 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 EDF1O60869 148 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PROSCO94903 275 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ZWINTO95229 277 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ATP5BP06576 529 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 NPR1P16066 1061 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ACADSP16219 412 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 GARTP22102 1010 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ALDH1B1P30837 517 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ALDH3A1P30838 453 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 RARRES1P49788 294 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 DLG4P78352 724 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SATB1Q01826 763 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MAP2K1Q02750 393 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MYO1EQ12965 1108 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 TTLL12Q14166 644 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SPARCL1Q14515 664 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MORF4L2Q15014 288 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 E2F5Q15329 346 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM133BQ5BKY9 247 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKRD20A2Q5SQ80 823 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKRD20A1Q5TYW2 823 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ANKRD20A3Q5VUR7 823 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 AADACL2Q6P093 401 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MIS18BP1Q6P0N0 1132 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 MON1BQ7L1V2 547 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 APBB1IPQ7Z5R6 666 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 FBXL13Q8NEE6 735 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP2W1Q8TAV3 490 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PLEKHO2Q8TD55 490 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 STK32AQ8WU08 396 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ALKBH8Q96BT7 664 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ZNF577Q9BSK1 485 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 DHRS4Q9BTZ2 278 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CCDC28BQ9BUN5 200 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms