RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SLC38A7Q9NVC3 462 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 CPSF3Q9UKF6 684 aaKnown RBP20.78■□□□□ 0.92
SF3A1-202ENST00000411423 PCDHA7Q9UN72 937 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 STYXL1Q9Y6J8 313 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 MTCL1Q9Y4B5 1905 aaKnown RBP20.78■□□□□ 0.92
SF3A1-202ENST00000411423 ADSSP30520 456 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 ELAVL2Q12926 359 aaKnown RBP20.77■□□□□ 0.92
SF3A1-202ENST00000411423 KREMEN2Q8NCW0 462 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 HPS3Q969F9 1004 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 DHX58Q96C10 678 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 PLEKHA5Q9HAU0 1116 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 KBTBD4Q9NVX7 518 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 MTRRQ9UBK8 725 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 FBXW11Q9UKB1 542 aa20.77■□□□□ 0.92
SF3A1-202ENST00000411423 SPDYE4A6NLX3 237 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 PPEF2O14830 753 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 N4BP1O75113 896 aaKnown RBP20.76■□□□□ 0.91
SF3A1-202ENST00000411423 IDEP14735 1019 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 SCP2P22307 547 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 ACOT2P49753 483 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 CRELD2Q6UXH1 353 aaPredicted RBP20.76■□□□□ 0.91
SF3A1-202ENST00000411423 C15orf39Q6ZRI6 1047 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 KIF12Q96FN5 646 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 SMOC2Q9H3U7 446 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 MRPL44Q9H9J2 332 aaKnown RBP20.76■□□□□ 0.91
SF3A1-202ENST00000411423 PANK4Q9NVE7 773 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 SEL1LQ9UBV2 794 aa20.76■□□□□ 0.91
SF3A1-202ENST00000411423 ANK1P16157 1881 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 C1RP00736 705 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 GAP43P17677 238 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 CASP1P29466 404 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 LRPAP1P30533 357 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 RPL9P32969 192 aaKnown RBP20.75■□□□□ 0.91
SF3A1-202ENST00000411423 OR1D2P34982 312 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 WNT7BP56706 349 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 CREMQ03060 361 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 L1TD1Q5T7N2 865 aaKnown RBP20.75■□□□□ 0.91
SF3A1-202ENST00000411423 JADE1Q6IE81 842 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 HDAC7Q8WUI4 952 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 EDAQ92838 391 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 PLEKHA4Q9H4M7 779 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 RPF1Q9H9Y2 349 aaKnown RBP20.75■□□□□ 0.91
SF3A1-202ENST00000411423 OLFML3Q9NRN5 406 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 RCOR1Q9UKL0 485 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 CDY1Q9Y6F8 540 aa20.75■□□□□ 0.91
SF3A1-202ENST00000411423 TBC1D4O60343 1298 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 TECTAO75443 2155 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 ZMYND10O75800 440 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 GCNT3O95395 438 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 NFICP08651 508 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 PDIA4P13667 645 aaKnown RBP20.74■□□□□ 0.91
SF3A1-202ENST00000411423 ZXDAP98168 799 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 PPP2R3AQ06190 1150 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 RAB33AQ14088 237 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 MRPL58Q14197 206 aaKnown RBP20.74■□□□□ 0.91
SF3A1-202ENST00000411423 PTPN21Q16825 1174 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 VARS2Q5ST30 1063 aaKnown RBP20.74■□□□□ 0.91
SF3A1-202ENST00000411423 ADALQ6DHV7 355 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 KCNG4Q8TDN1 519 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 SMG7Q92540 1137 aaKnown RBP20.74■□□□□ 0.91
SF3A1-202ENST00000411423 HVCN1Q96D96 273 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 FAM212AQ96EL1 285 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 TRIM9Q9C026 710 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 TNMDQ9H2S6 317 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 NR2E1Q9Y466 385 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 BACE2Q9Y5Z0 518 aa20.74■□□□□ 0.91
SF3A1-202ENST00000411423 PRR33A8MZF0 331 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 PRPF6O94906 941 aaKnown RBP20.73■□□□□ 0.91
SF3A1-202ENST00000411423 ASGR2P07307 311 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 RESP18Q5W5W9 173 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 TDRD5Q8NAT2 981 aaKnown RBP20.73■□□□□ 0.91
SF3A1-202ENST00000411423 SUSD3Q96L08 255 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 RHOBTB2Q9BYZ6 727 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 PRKD2Q9BZL6 878 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 WDR6Q9NNW5 1121 aaKnown RBP20.73■□□□□ 0.91
SF3A1-202ENST00000411423 ZDHHC7Q9NXF8 308 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 LIMD1Q9UGP4 676 aa20.73■□□□□ 0.91
SF3A1-202ENST00000411423 AGO2Q9UKV8 859 aaKnown RBP20.73■□□□□ 0.91
SF3A1-202ENST00000411423 UBQLN1Q9UMX0 589 aaKnown RBP20.73■□□□□ 0.91
SF3A1-202ENST00000411423 POLR2DO15514 142 aaKnown RBP20.72■□□□□ 0.91
SF3A1-202ENST00000411423 TRAPPC3O43617 180 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 ABCD1P33897 745 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 MCM4P33991 863 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 HOXD13P35453 343 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 ME1P48163 572 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 KYAT1Q16773 422 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 SPATA1Q5VX52 437 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 SCARA3Q6AZY7 606 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 PDXDC1Q6P996 788 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 CCDC149Q6ZUS6 474 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 HFE2Q6ZVN8 426 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 ANKS3Q6ZW76 656 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 ZDHHC14Q8IZN3 488 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 USTQ9Y2C2 406 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 NUB1Q9Y5A7 615 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 CLUHO75153 1309 aa20.72■□□□□ 0.91
SF3A1-202ENST00000411423 DOCK6Q96HP0 2047 aa20.71■□□□□ 0.91
SF3A1-202ENST00000411423 SYN3O14994 580 aa20.71■□□□□ 0.91
SF3A1-202ENST00000411423 C8AP07357 584 aa20.71■□□□□ 0.91
SF3A1-202ENST00000411423 CYP3A5P20815 502 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms