RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SCYL1Q96KG9 808 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 TEKT5Q96M29 485 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 GNL3LQ9NVN8 582 aaKnown RBP7.63□□□□□ -1.19
USP40-202ENST00000409945 TCEAL9Q9UHQ7 104 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 TUBD1Q9UJT1 453 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 ZBTB21Q9ULJ3 1066 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 COL4A5P29400 1685 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 LTBP1Q14766 1721 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 SLC5A1P13866 664 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 IGFBP6P24592 240 aaPredicted RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 HIBADHP31937 336 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 LIMS1P48059 325 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ITGA1P56199 1179 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 CCT2P78371 535 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 IL13RA1P78552 427 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 CACNB2Q08289 660 aaPredicted RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 PUM3Q15397 648 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 PHYKPLQ8IUZ5 450 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 SLC41A1Q8IVJ1 513 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ITPRIPQ8IWB1 547 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 DTX3Q8N9I9 347 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 TACO1Q9BSH4 297 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 SLC13A1Q9BZW2 595 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 CD209Q9NNX6 404 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 HSPBP1Q9NZL4 362 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 LRRFIP2Q9Y608 721 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 EYA2O00167 538 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 PCDH8O95206 1070 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 PDE8BO95263 885 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 PF4V1P10720 104 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 IL15P40933 162 aaPredicted RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 MTNR1BP49286 362 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 TBC1D10BQ4KMP7 808 aaPredicted RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 TTC38Q5R3I4 469 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 KANSL1Q7Z3B3 1105 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ZZZ3Q8IYH5 903 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ANKRD44Q8N8A2 993 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 TSPEARQ8WU66 669 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ANLNQ9NQW6 1124 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ABT1Q9ULW3 272 aaKnown RBP7.62□□□□□ -1.19
USP40-202ENST00000409945 RIPOR2Q9Y4F9 1068 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 ZNF609O15014 1411 aa7.62□□□□□ -1.19
USP40-202ENST00000409945 CIAO1O76071 339 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 C5AR1P21730 350 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 NF2P35240 595 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 FKBP1AP62942 108 aaKnown RBP7.61□□□□□ -1.19
USP40-202ENST00000409945 NKX3-2P78367 333 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 ACAP2Q15057 778 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 CMTR2Q8IYT2 770 aaKnown RBP7.61□□□□□ -1.19
USP40-202ENST00000409945 CHPFQ8IZ52 775 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 STPG3Q8N7X2 389 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 TBC1D22AQ8WUA7 517 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 LPIN2Q92539 896 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 KAZALD1Q96I82 304 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 MAML3Q96JK9 1138 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 MEIS3Q99687 375 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 KCTD10Q9H3F6 313 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 MTG2Q9H4K7 406 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 MYOZ2Q9NPC6 264 aa7.61□□□□□ -1.19
USP40-202ENST00000409945 SASH1O94885 1247 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 PFKMP08237 780 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 IL1R1P14778 569 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 ECE1P42892 770 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 RBM5P52756 815 aaKnown RBP eCLIP7.6□□□□□ -1.19
USP40-202ENST00000409945 G3BP1Q13283 466 aaKnown RBP eCLIP7.6□□□□□ -1.19
USP40-202ENST00000409945 OS9Q13438 667 aaPredicted RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 DACT2Q5SW24 774 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 KANK2Q63ZY3 851 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 VASNQ6EMK4 673 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 PPM1NQ8N819 430 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 CPA5Q8WXQ8 436 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 FOXB1Q99853 325 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 PUS3Q9BZE2 481 aaKnown RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 SIL1Q9H173 461 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 USP36Q9P275 1121 aaKnown RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 DPP7Q9UHL4 492 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 ZFP69BQ9UJL9 534 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 RCAN3Q9UKA8 241 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 PASKQ96RG2 1323 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 COL4A1P02462 1669 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 MAST3O60307 1309 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 AGXTP21549 392 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 LGALS4P56470 323 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 ANTXR2P58335 489 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 ZNF280AP59817 542 aaPredicted RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 SMAD4Q13485 552 aaKnown RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 DLGAP5Q15398 846 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.6□□□□□ -1.19
USP40-202ENST00000409945 LRRC24Q50LG9 513 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 GORABQ5T7V8 394 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 TMEM57Q8N5G2 664 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 IGDCC4Q8TDY8 1250 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 DCP1AQ9NPI6 582 aaPredicted RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 GALNT8Q9NY28 637 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 PGAP2Q9UHJ9 254 aa7.6□□□□□ -1.19
USP40-202ENST00000409945 EVLQ9UI08 416 aaPredicted RBP7.6□□□□□ -1.19
USP40-202ENST00000409945 PSME4Q14997 1843 aa7.59□□□□□ -1.19
USP40-202ENST00000409945 CELF2O95319 508 aaKnown RBP7.59□□□□□ -1.19
USP40-202ENST00000409945 PLA2G1BP04054 148 aaKnown RBP7.59□□□□□ -1.19
USP40-202ENST00000409945 NCAM1P13591 858 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms