RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 IMPG2Q9BZV3 1241 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 AGO3Q9H9G7 860 aaKnown RBP13.41□□□□□ -0.26
CHMP3-204ENST00000409727 APOBEC3GQ9HC16 384 aaKnown RBP13.41□□□□□ -0.26
CHMP3-204ENST00000409727 KLK14Q9P0G3 267 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 TRIM10Q9UDY6 481 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 PARP2Q9UGN5 583 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 ADAMTS1Q9UHI8 967 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 UMODL1Q5DID0 1318 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 ANK1P16157 1881 aa13.41□□□□□ -0.26
CHMP3-204ENST00000409727 SSU72P8A0A1W2PR75 194 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 EIF3CLB5ME19 914 aaKnown RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 DNM1LO00429 736 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ZC3H11AO75152 810 aaKnown RBP eCLIP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 RECQL4O94761 1208 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 KRT5P13647 590 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 CD52P31358 61 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 KRT83P78385 493 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 PTPN11Q06124 597 aaPredicted RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 UBXN11Q5T124 520 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ZNF618Q5T7W0 954 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 KIF12Q96FN5 646 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 EIF3CQ99613 913 aaKnown RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ACP6Q9NPH0 428 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 SEPT11Q9NVA2 429 aaKnown RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 IPPQ9Y573 584 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 NUB1Q9Y5A7 615 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 A0A087X0T9 212 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ARVCFO00192 962 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ITGB3P05106 788 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 FAM228BP0C875 321 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ASTE1Q2TB18 679 aaPredicted RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ARHGAP29Q52LW3 1261 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 NYAP1Q6ZVC0 841 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 RPAINQ86UA6 219 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 DNAAF5Q86Y56 855 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 C1orf127Q8N9H9 656 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 IFIH1Q9BYX4 1025 aaKnown RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 ASB7Q9H672 318 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 DAAM1Q9Y4D1 1078 aa13.4□□□□□ -0.26
CHMP3-204ENST00000409727 BZW2Q9Y6E2 419 aaKnown RBP13.4□□□□□ -0.26
CHMP3-204ENST00000409727 RCCD1A6NED2 376 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 CYP26A1O43174 497 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 CALCAP01258 141 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 RPLP2P05387 115 aaKnown RBP13.39□□□□□ -0.27
CHMP3-204ENST00000409727 PRKCIP41743 596 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 PAK2Q13177 524 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 CUL2Q13617 745 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 TRIM71Q2Q1W2 868 aaKnown RBP13.39□□□□□ -0.27
CHMP3-204ENST00000409727 SCARA5Q6ZMJ2 495 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 SHC3Q92529 594 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 SNX27Q96L92 541 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 IRX2Q9BZI1 471 aaPredicted RBP13.39□□□□□ -0.27
CHMP3-204ENST00000409727 SIX4Q9UIU6 781 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 PADI3Q9ULW8 664 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 PCDHA13Q9Y5I0 950 aa13.39□□□□□ -0.27
CHMP3-204ENST00000409727 GOLGA6L9A6NEM1 432 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 GPR182O15218 404 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ASS1P00966 412 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 CCDC172P0C7W6 258 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 CKBP12277 381 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 POLR2BP30876 1174 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ATN1P54259 1190 aaPredicted RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 GCNT1Q02742 428 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 LPIN1Q14693 890 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SLC18A3Q16572 532 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SGSM1Q2NKQ1 1148 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ZNF699Q32M78 642 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 FBXO47Q5MNV8 452 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 TAF3Q5VWG9 929 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SYT10Q6XYQ8 523 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SLC47A2Q86VL8 602 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SLC43A3Q8NBI5 491 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SMG8Q8ND04 991 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SLC20A1Q8WUM9 679 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 JAKMIP2Q96AA8 810 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ZMAT2Q96NC0 199 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 NXF1Q9UBU9 619 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 GUCA1BQ9UMX6 200 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 PCDHB2Q9Y5E7 798 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 TMCO5BA8MYB1 307 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 SGPL1O95470 568 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 HSPA8P11142 646 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ZSCAN20P17040 1043 aaPredicted RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 ARHGAP25P42331 645 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 MAGEA1P43355 309 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 LBX1P52954 281 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 CCDC122Q5T0U0 273 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 CTU1Q7Z7A3 348 aaKnown RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 VPS36Q86VN1 386 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 GLYCTKQ8IVS8 523 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 FAM71AQ8IYT1 594 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 RNF169Q8NCN4 708 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 C18orf25Q96B23 403 aaPredicted RBP13.38□□□□□ -0.27
CHMP3-204ENST00000409727 LACRTQ9GZZ8 138 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 PLEKHA5Q9HAU0 1116 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 DPP3Q9NY33 737 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 TUBGCP4Q9UGJ1 667 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 OGDHLQ9ULD0 1010 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 AGAP1Q9UPQ3 857 aa13.38□□□□□ -0.27
CHMP3-204ENST00000409727 R3HCC1Q9Y3T6 440 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms