RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ZNF564Q8TBZ8 553 aaPredicted RBP22.18■■□□□ 1.14
USP39-203ENST00000409470 IFT122Q9HBG6 1241 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 TNFSF13BQ9Y275 285 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 A0A087WZ62 844 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 MTA2O94776 668 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 POU5F1BQ06416 359 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 TRPC3Q13507 836 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 IQSEC1Q6DN90 963 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 FDXACB1Q9BRP7 624 aaPredicted RBP22.17■■□□□ 1.14
USP39-203ENST00000409470 AP1M1Q9BXS5 423 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 CDT1Q9H211 546 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 ST7Q9NRC1 585 aa22.17■■□□□ 1.14
USP39-203ENST00000409470 KRIT1O00522 736 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 VTNP04004 478 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 MMP3P08254 477 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 IQCF3P0C7M6 154 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 TMEM191BP0C7N4 346 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 PPFIA1Q13136 1202 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 GPS2Q13227 327 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 MTHFD1LQ6UB35 978 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 LINC01465Q8N7H1 131 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 CEP120Q8N960 986 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 RBBP8NLQ8NC74 664 aaPredicted RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 UVRAGQ9P2Y5 699 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 CNOT8Q9UFF9 292 aaKnown RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 CSDE1O75534 798 aaKnown RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 HEXIM1O94992 359 aaKnown RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 ASS1P00966 412 aaKnown RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 UNGP13051 313 aaPredicted RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 GNA15P30679 374 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 MYL6P60660 151 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 DGKDQ16760 1214 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 SCARA3Q6AZY7 606 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 IFT20Q8IY31 132 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 UBL4BQ8N7F7 174 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 CARD9Q9H257 536 aa22.16■■□□□ 1.14
USP39-203ENST00000409470 RPF1Q9H9Y2 349 aaKnown RBP22.16■■□□□ 1.14
USP39-203ENST00000409470 MIF4GDA9UHW6 222 aaKnown RBP22.15■■□□□ 1.14
USP39-203ENST00000409470 TNNC2P02585 160 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 HOXC6P09630 235 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 CPA5Q8WXQ8 436 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 ANKRD36BP1Q96IX9 119 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 GDAP1L1Q96MZ0 367 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 SCLT1Q96NL6 688 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 ACBD3Q9H3P7 528 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 PLEKHA4Q9H4M7 779 aa22.15■■□□□ 1.14
USP39-203ENST00000409470 ZEB2O60315 1214 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 GLI1P08151 1106 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 COMTP21964 271 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 GRIK4Q16099 956 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 FAM187BQ17R55 369 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 SGSM1Q2NKQ1 1148 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 NAA35Q5VZE5 725 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 NLRP7Q8WX94 980 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 RPS6KC1Q96S38 1066 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 UBXN6Q9BZV1 441 aa22.14■■□□□ 1.14
USP39-203ENST00000409470 CCDC188H7C350 402 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 FGGP02679 453 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 NSFP46459 744 aaKnown RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 ZNF157P51786 506 aaPredicted RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 GUCY2DQ02846 1103 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 TNFAIP2Q03169 654 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 DCAF12L1Q5VU92 463 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 EFCAB13Q8IY85 973 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 MSL3Q8N5Y2 521 aaKnown RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 AENQ8WTP8 325 aaKnown RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 BTBD6Q96KE9 485 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 RNPC3Q96LT9 517 aaKnown RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 EPB41L5Q9HCM4 733 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 TTC7AQ9ULT0 858 aaPredicted RBP22.14■■□□□ 1.13
USP39-203ENST00000409470 CNTN6Q9UQ52 1028 aa22.14■■□□□ 1.13
USP39-203ENST00000409470 THAP12O43422 761 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 RAD51CO43502 376 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 B4GALT4O60513 344 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 IL18RAPO95256 599 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 CXCL8P10145 99 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 TNFRSF8P28908 595 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 OAS2P29728 719 aaKnown RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 TRIM72Q6ZMU5 477 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 IFNLR1Q8IU57 520 aaPredicted RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 MCOLN2Q8IZK6 566 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 CYFIP2Q96F07 1278 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 TRIM11Q96F44 468 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 GPR25O00155 361 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 SPOPO43791 374 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 CYP1A1P04798 512 aaPredicted RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 HOXD8P13378 290 aaPredicted RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 ZNF211Q13398 564 aaPredicted RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 PASD1Q8IV76 773 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 TMEM192Q8IY95 271 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 ALG3Q92685 438 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 CPB2Q96IY4 423 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 NAP1L3Q99457 506 aaPredicted RBP22.13■■□□□ 1.13
USP39-203ENST00000409470 ZSWIM1Q9BR11 485 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 NIF3L1Q9GZT8 377 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 NMRK2Q9NPI5 230 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 GDF3Q9NR23 364 aa22.13■■□□□ 1.13
USP39-203ENST00000409470 IGF2BP3O00425 579 aaKnown RBP eCLIP22.12■■□□□ 1.13
USP39-203ENST00000409470 ADCY6O43306 1168 aa22.12■■□□□ 1.13
USP39-203ENST00000409470 MYBL1P10243 752 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms