RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ANXA9O76027 345 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 GDF11O95390 407 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 POLBP06746 335 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 MYL2P10916 166 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF18P17022 549 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CORO7P57737 925 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 EIF3EP60228 445 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 TTLL9Q3SXZ7 439 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 USPL1Q5W0Q7 1092 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 KIAA2013Q8IYS2 634 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 EGFL8Q99944 293 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 BRD8Q9H0E9 1235 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 PALMDQ9NP74 551 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 DCDC2Q9UHG0 476 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 SLC24A2Q9UI40 661 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 RPL26L1Q9UNX3 145 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 SYNJ2BP-COX16A0A087WUM0 186 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 DENND3A2RUS2 1198 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 POTEFA5A3E0 1075 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF839A8K0R7 811 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 SASH1O94885 1247 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 POTEIP0CG38 1075 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ATP1A3P13637 1013 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ARSEP51690 589 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 SLC7A5Q01650 507 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 TSTA3Q13630 321 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 RWDD4Q6NW29 188 aaKnown RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 POTEEQ6S8J3 1075 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 PPIL6Q8IXY8 311 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 THNSL1Q8IYQ7 743 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 C11orf70Q9BRQ4 267 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 YIPF3Q9GZM5 350 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM245Q9H330 911 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 H2AFY2Q9P0M6 372 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 COX16Q9P0S2 106 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 NYAP2Q9P242 653 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 LSM7Q9UK45 103 aaKnown RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 AGO2Q9UKV8 859 aaKnown RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ZMYND8Q9ULU4 1186 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 PRR23D1E9PI22 279 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 TK2O00142 265 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ZMYND10O75800 440 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 KRT75O95678 551 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 APBA3O96018 575 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 PRR23D2P0DMB1 279 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 SOX6P35712 828 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 SLC12A1Q13621 1099 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 C11orf88Q6PI97 169 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 SMYD4Q8IYR2 804 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 CMTR1Q8N1G2 835 aaKnown RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 CCNYL1Q8N7R7 359 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 PPP2R3CQ969Q6 453 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 ASIC4Q96FT7 647 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 FTOQ9C0B1 505 aaKnown RBP eCLIP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 WHRNQ9P202 907 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 CTNNAL1Q9UBT7 734 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 TTC7AQ9ULT0 858 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-203ENST00000409050 PLA2R1Q13018 1463 aa6.4□□□□□ -1.39
SCN1A-203ENST00000409050 WDR91A4D1P6 747 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 A8MXQ7 604 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 C19orf81C9J6K1 198 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TIMM44O43615 452 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CD58P19256 250 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 EPS8Q12929 822 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 BTBD8Q5XKL5 378 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 FAM47EQ6ZV65 393 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 KCTD1Q719H9 257 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DDHD1Q8NEL9 900 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 EME1Q96AY2 570 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 COA7Q96BR5 231 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ORAI2Q96SN7 254 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PHACTR1Q9C0D0 580 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PLEKHA4Q9H4M7 779 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 RMND5AQ9H871 391 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DDX28Q9NUL7 540 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CNOT7Q9UIV1 285 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 GTF3C4Q9UKN8 822 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DRG1Q9Y295 367 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 GDAQ9Y2T3 454 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CAB39Q9Y376 341 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 SOAT2O75908 522 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PLA2G4AP47712 749 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TMED10P49755 219 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 KCNK10P57789 538 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 LBRQ14739 615 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 NR1I3Q14994 352 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 NCAPHQ15003 741 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PDK2Q15119 407 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 FASTKD1Q53R41 847 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PPP6R3Q5H9R7 873 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 WASHC2DQ5SRD0 308 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DCP1BQ8IZD4 617 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 MSL3Q8N5Y2 521 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ST13P5Q8NFI4 369 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 OSCP1Q8WVF1 389 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 RAPGEF5Q92565 580 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 RMDN3Q96TC7 470 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ERP44Q9BS26 406 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CCDC90BQ9GZT6 254 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms