RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZNF341Q9BYN7 854 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 CHST7Q9NS84 486 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 HAO1Q9UJM8 370 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 MAD1L1Q9Y6D9 718 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 RNF8O76064 485 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 HMGB2P26583 209 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SH3BGRP55822 239 aaPredicted RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 NOP14P78316 857 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 EN1Q05925 392 aaPredicted RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 LDHDQ86WU2 507 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 MAML1Q92585 1016 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SIKE1Q9BRV8 207 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 C10orf88Q9H8K7 445 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 NPHS2Q9NP85 383 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 ASTN1O14525 1302 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 ZC3H4Q9UPT8 1303 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 TLR3O15455 904 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 MAP3K6O95382 1288 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SPATA31C1P0DKV0 1188 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 CPA2P48052 419 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 GSCP56915 257 aaPredicted RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 PDIA2Q13087 525 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 MTMR1Q13613 665 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 CLUL1Q15846 466 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SPRED3Q2MJR0 410 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 APOBEC3HQ6NTF7 200 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 ZNF720Q7Z2F6 126 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SIX5Q8N196 739 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 UNC45AQ9H3U1 944 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 LRRC4CQ9HCJ2 640 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 C2CD2Q9Y426 696 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 A8MUI8 341 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 MEIS2O14770 477 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 LSM1O15116 133 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 TGFB1I1O43294 461 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SLITRK3O94933 977 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 GH1P01241 217 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 TFAMQ00059 246 aaKnown RBP12.64□□□□□ -0.39
HMGB1-206ENST00000405805 PPP3CAQ08209 521 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 ZCWPW2Q504Y3 356 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 PRELID2Q8N945 189 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 TAS1R2Q8TE23 839 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 TRAF3IP3Q9Y228 551 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 STK24Q9Y6E0 443 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 SPATA31A6Q5VVP1 1343 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 NID2Q14112 1375 aa12.64□□□□□ -0.39
HMGB1-206ENST00000405805 ATP6V1G2O95670 118 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 ZFXP17010 805 aaPredicted RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 RRM1P23921 792 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 ARSEP51690 589 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 SNRNP35Q16560 246 aaKnown RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 KCTD21Q4G0X4 260 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 KRT39Q6A163 491 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 SPOPLQ6IQ16 392 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 ST13P4Q8IZP2 240 aaPredicted RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 ZNF483Q8TF39 744 aaPredicted RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 PYROXD1Q8WU10 500 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 NDEL1Q9GZM8 345 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 WNT8AQ9H1J5 351 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 LRP6O75581 1613 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 CCDC195A0A1B0GUA6 201 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 DRD4P21917 467 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 POLGP54098 1239 aaPredicted RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 DRP2Q13474 957 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 CDO1Q16878 200 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 SMTNL2Q2TAL5 461 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 NIM1KQ8IY84 436 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 FLAD1Q8NFF5 587 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 SNF8Q96H20 258 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 CLMNQ96JQ2 1002 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 ARL2BPQ9Y2Y0 163 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 SLC16A3O15427 465 aaKnown RBP12.63□□□□□ -0.39
HMGB1-206ENST00000405805 FBXL13Q8NEE6 735 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 TUBGCP6Q96RT7 1819 aa12.63□□□□□ -0.39
HMGB1-206ENST00000405805 KIAA0391O15091 583 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 RIPK2O43353 540 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 S100BP04271 92 aaPredicted RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 QARSP47897 775 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 RNASELQ05823 741 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ZSWIM2Q8NEG5 633 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 RMDN3Q96TC7 470 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 KDM4CQ9H3R0 1056 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 UBN1Q9NPG3 1134 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 MARCOQ9UEW3 520 aaPredicted RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 CRYBG1Q9Y4K1 1723 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 NUP98P52948 1817 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ANKRD63C9JTQ0 380 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ALDH5A1P51649 535 aaPredicted RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ELF3P78545 371 aaPredicted RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 BTKQ06187 659 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 SPARCL1Q14515 664 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 LRRC36Q1X8D7 754 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 HHIPL2Q6UWX4 724 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 TRABDQ9H4I3 376 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 COG5Q9UP83 839 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 H7C0C1 242 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 MAPK13O15264 365 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 LCA5LO95447 670 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ZSCAN5DPP0CG00 497 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms