RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CXorf38Q8TB03 319 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 TIFAQ96CG3 184 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 MTMR12Q9C0I1 747 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 TSPY26PQ9H489 355 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 MSRAQ9UJ68 235 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 DERAQ9Y315 318 aa17.26■□□□□ 0.35
HMGA1-204ENST00000401473 COL6A3P12111 3177 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 FGFR1OPO95684 399 aaKnown RBP17.25■□□□□ 0.35
HMGA1-204ENST00000401473 CST3P01034 146 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-204ENST00000401473 GALTP07902 379 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 CLCNKBP51801 687 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 GAS2L3Q86XJ1 694 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 WDR49Q8IV35 697 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 TRIM59Q8IWR1 403 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 C1orf127Q8N9H9 656 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 SLC35C1Q96A29 364 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 CNOT6LQ96LI5 555 aaKnown RBP17.25■□□□□ 0.35
HMGA1-204ENST00000401473 CGRRF1Q99675 332 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 UBQLN1Q9UMX0 589 aaKnown RBP17.25■□□□□ 0.35
HMGA1-204ENST00000401473 XIRP2A4UGR9 3374 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 KIAA1671Q9BY89 1806 aa17.25■□□□□ 0.35
HMGA1-204ENST00000401473 NRP1O14786 923 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 GNA14O95837 355 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 C4BPAP04003 597 aaKnown RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 KRT13P13646 458 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 ZNF18P17022 549 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 BCAR1P56945 870 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 HSP90AA2PQ14568 343 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 UPP1Q16831 310 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 DUOXA2Q1HG44 320 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 CCDC40Q4G0X9 1142 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 TMEM173Q86WV6 379 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 NT5DC4Q86YG4 428 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 FAM193BQ96PV7 902 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 TSPAN18Q96SJ8 248 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 METTL14Q9HCE5 456 aaKnown RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 SLC38A7Q9NVC3 462 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 DPP3Q9NY33 737 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 PPEF2O14830 753 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 CAVIN2O95810 425 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 ALDH2P05091 517 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 ITGB1P05556 798 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 CYP3A5P20815 502 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 SLC11A1P49279 550 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 FXR1P51114 621 aaKnown RBP eCLIP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 DCAF17Q5H9S7 520 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 SV2AQ7L0J3 742 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 TRAPPC11Q7Z392 1133 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 C3orf58Q8NDZ4 430 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 FAM200AQ8TCP9 573 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 C17orf80Q9BSJ5 609 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 TTYH1Q9H313 450 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-204ENST00000401473 SLC28A3Q9HAS3 691 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 SIX4Q9UIU6 781 aa17.24■□□□□ 0.35
HMGA1-204ENST00000401473 NLRC5Q86WI3 1866 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 ATP1A3P13637 1013 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 OR1G1P47890 313 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 GCLMP48507 274 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 ALDH7A1P49419 539 aaKnown RBP17.23■□□□□ 0.35
HMGA1-204ENST00000401473 ENPEPQ07075 957 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CBWD6Q4V339 395 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 TCP11X2Q5H9J9 407 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CBWD3Q5JTY5 395 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CBWD5Q5RIA9 395 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 SPOUT1Q5T280 376 aaKnown RBP17.23■□□□□ 0.35
HMGA1-204ENST00000401473 TCERG1LQ5VWI1 586 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 TDRD10Q5VZ19 366 aaKnown RBP17.23■□□□□ 0.35
HMGA1-204ENST00000401473 PPP2R2DQ66LE6 453 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 KCNT2Q6UVM3 1135 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CD300LGQ6UXG3 332 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 C15orf39Q6ZRI6 1047 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 BEST2Q8NFU1 509 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CACTINQ8WUQ7 758 aaKnown RBP17.23■□□□□ 0.35
HMGA1-204ENST00000401473 CERS4Q9HA82 394 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 MTUS1Q9ULD2 1270 aa17.23■□□□□ 0.35
HMGA1-204ENST00000401473 SPTBN5Q9NRC6 3674 aaKnown RBP17.23■□□□□ 0.35
HMGA1-204ENST00000401473 ANO9A1A5B4 782 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 SMTNL1A8MU46 457 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 KCNJ18B7U540 433 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 LRRN2O75325 713 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 ITGB3P05106 788 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 TMEM191BP0C7N4 346 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 LRPAP1P30533 357 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 KCNJ12Q14500 433 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 BCL7CQ8WUZ0 217 aaPredicted RBP17.22■□□□□ 0.35
HMGA1-204ENST00000401473 MMRN2Q9H8L6 949 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 FAN1Q9Y2M0 1017 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 PRG3Q9Y2Y8 225 aaPredicted RBP17.22■□□□□ 0.35
HMGA1-204ENST00000401473 BECN2A8MW95 431 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 PIRO00625 290 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 VNN1O95497 513 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 BMPR1AP36894 532 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 KCNH2Q12809 1159 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 ZACNQ401N2 412 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 C9orf57Q5W0N0 161 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 COLGALT1Q8NBJ5 622 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 RNF214Q8ND24 703 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 ANKRD36BP1Q96IX9 119 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 TMEM175Q9BSA9 504 aa17.22■□□□□ 0.35
HMGA1-204ENST00000401473 ZNF576Q9H609 170 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms